Agent skill · mims-harvard
setup-mofa-remote-tool
Set up, launch, validate, and troubleshoot the MOFA+ ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying or auditing this implementation.
What it needs
About 4k tokens when loaded.
What this skill does
Set up MOFA+ as a remote tool Validation status (2026-08-16): MOFA+ 0.7.4, loopback discovery/call, and non-finite-input rejection passed; the current 30-sample/two-view fixture returned two non-degenerate factors and variance components. Public publication, cross-user isolation, representative multi-omics accuracy, broad concurrency, and recovery remain incomplete. Authenticated private Platform import and owner testing passed on 2026-08-16; public publication and independent-caller authorization/isolation remain untested. Prerequisites Run from the ToolUniverse repository root on Linux with Python 3.12.3. CPU sufficient for minimal input; GPU support is backend-dependent. Keep provider data, weights, caches, and credentials outside Git. Bind to loopback. A non-loopback bind requires TOOLUNIVERSEAPITOKEN; never put it in arguments or results. Run the standard-library contract check before downloading large dependencies: ~~~bash python scripts/remotevalidation/setupskillpreflight.py --implementation mofa ~~~ After exporting provider resources, add --check-provider-env. After the server starts, add --live to verify the exact MCP tool set without running the model. Before sharing, add --check-connect-prereqs; this reports only whether a key is set and never prints its value. Create an isolated environment ~~~bash python3 -m venv .venvs/mofa . .venvs/mofa/bin/activate python -m pip install --upgrade pip python -m pip install -e . python -m pip install -r src/tooluniverse/remote/mofa/requirements.txt ~~~ The clean-install commands passed in the validation workspace; rerun them on the deployment host and retain the resulting lock/install evidence. Obtain credentials, data, and model weights No credential is needed for synthetic inline views. Do not send private matrices to shared deployments; review input and MOFA+ licenses. …
How to use it
Reference it in AdaL, Claude Code, Cursor or any coding agent — nothing to install:
@skills mims-harvard/setup-mofa-remote-tool