@skills · Owner

Agent skills by mims-harvard

471 skills indexed from github.com/mims-harvard. Reference any of them in AdaL, Claude Code, Cursor or any coding agent — nothing to install.

• create-tooluniverse-skill · Skill · 1,614 stars

  Create high-quality ToolUniverse skills following test-driven, implementation-agnostic methodology.

• devtu-auto-discover-apis · Skill · 1,614 stars

  Automatically discover life science APIs online, create ToolUniverse tools, validate them, and prepare integration PRs. Performs gap analysis to identify m

• devtu-benchmark-harness · Skill · 1,614 stars

  Continuous improvement system for ToolUniverse tools, skills, and plugin. Run benchmarks, diagnose failures, route fixes to devtu skills, retest. Use after

• devtu-code-optimization · Skill · 1,614 stars

  Code quality patterns and guidelines for ToolUniverse tool development. Apply when writing, fixing, or refactoring tool Python code in the ToolUniverse pro

• devtu-create-tool · Skill · 1,614 stars

  Create new scientific tools for ToolUniverse framework with proper structure, validation, and testing. Use when users need to add tools to ToolUniverse, im

• devtu-docs-quality · Skill · 1,614 stars

  TOP PRIORITY skill — find and immediately fix or remove every piece of wrong, outdated, or redundant information in ToolUniverse docs. Wrong code, broken l

• devtu-fix-tool · Skill · 1,614 stars

  Fix failing ToolUniverse tools by diagnosing test failures, identifying root causes, implementing fixes, and validating solutions. Use when ToolUniverse to

• devtu-github · Skill · 1,614 stars

  GitHub workflow for ToolUniverse - push code safely by moving temp files, activating pre-commit hooks, running tests, and cleaning staged files. Use when p

• devtu-optimize-descriptions · Skill · 1,614 stars

  Optimize tool descriptions in ToolUniverse JSON configs for clarity and usability. Reviews descriptions for missing prerequisites, unexpanded abbreviations

• devtu-optimize-skills · Skill · 1,614 stars

  Optimize ToolUniverse skills for better report quality, evidence handling, and user experience. Apply patterns like tool verification, foundation data laye

• devtu-self-evolve · Skill · 1,614 stars

  Orchestrate the full ToolUniverse self-improvement cycle: discover APIs, create tools, test with researcher personas, fix issues, optimize skills, and push

• plugin · Collection · 1,614 stars
• plugins · Collection · 1,614 stars
• setup-tooluniverse · Skill · 1,614 stars

  Install and configure ToolUniverse for any use case — MCP server (chat-based), CLI (command line with 9 subcommands), or Python SDK (Coding API with 3 call

• setup-tooluniverse · Skill · 1,614 stars

  Install and configure ToolUniverse for any use case — MCP server (chat-based), CLI (command line with 9 subcommands), or Python SDK (Coding API with 3 call

• setup-tooluniverse · Skill · 1,614 stars

  Install and configure ToolUniverse for any use case — MCP server (chat-based), CLI (command line with 9 subcommands), or Python SDK (Coding API with 3 call

• skills · Collection · 1,614 stars
• skills · Collection · 1,614 stars
• skills · Collection · 1,614 stars
• tooluniverse · Skill · 1,614 stars

  ToolUniverse plugin router. STEP 1 BEFORE ANY ANALYSIS: if the data folder contains `*_executed.ipynb`, run `tu run read_executed_notebook '{\"data_folder\

• tooluniverse · Skill · 1,614 stars

  ToolUniverse plugin router. STEP 1 BEFORE ANY ANALYSIS: if the data folder contains `*_executed.ipynb`, run `tu run read_executed_notebook '{\"data_folder\

• tooluniverse · Skill · 1,614 stars

  ToolUniverse plugin router. STEP 1 BEFORE ANY ANALYSIS: if the data folder contains `*_executed.ipynb`, run `tu run read_executed_notebook '{\"data_folder\

• tooluniverse · Collection · 1,614 stars
• tooluniverse · Collection · 1,614 stars
• tooluniverse-acmg-variant-classification · Skill · 1,614 stars

  Systematic ACMG/AMP germline variant classification with all 28 criteria (PVS1, PS1-4, PM1-6, PP1-5, BA1, BS1-4, BP1-7) for clinical significance. Produces

• tooluniverse-acmg-variant-classification · Skill · 1,614 stars

  Systematic ACMG/AMP germline variant classification with all 28 criteria (PVS1, PS1-4, PM1-6, PP1-5, BA1, BS1-4, BP1-7) for clinical significance. Produces

• tooluniverse-acmg-variant-classification · Skill · 1,614 stars

  Systematic ACMG/AMP germline variant classification with all 28 criteria (PVS1, PS1-4, PM1-6, PP1-5, BA1, BS1-4, BP1-7) for clinical significance. Produces

• tooluniverse-admet-prediction · Skill · 1,614 stars

  Comprehensive ADMET (Absorption, Distribution, Metabolism, Excretion, Toxicity) profiling for drug candidates. Integrates ADMET-AI predictions, SwissADME d

• tooluniverse-admet-prediction · Skill · 1,614 stars

  Comprehensive ADMET (Absorption, Distribution, Metabolism, Excretion, Toxicity) profiling for drug candidates. Integrates ADMET-AI predictions, SwissADME d

• tooluniverse-admet-prediction · Skill · 1,614 stars

  Comprehensive ADMET (Absorption, Distribution, Metabolism, Excretion, Toxicity) profiling for drug candidates. Integrates ADMET-AI predictions, SwissADME d

• tooluniverse-adverse-event-detection · Skill · 1,614 stars

  Detect and analyze adverse drug event signals using FDA FAERS reports, drug labels, and disproportionality statistics (PRR, ROR, IC). Generates quantitativ

• tooluniverse-adverse-event-detection · Skill · 1,614 stars

  Detect and analyze adverse drug event signals using FDA FAERS reports, drug labels, and disproportionality statistics (PRR, ROR, IC). Generates quantitativ

• tooluniverse-adverse-event-detection · Skill · 1,614 stars

  Detect and analyze adverse drug event signals using FDA FAERS reports, drug labels, and disproportionality statistics (PRR, ROR, IC). Generates quantitativ

• tooluniverse-adverse-outcome-pathway · Skill · 1,614 stars

  Map environmental and industrial chemicals to adverse outcome pathways (AOPs) — molecular initiating event to organ-level toxicity. Uses AOPWiki, GHS class

• tooluniverse-adverse-outcome-pathway · Skill · 1,614 stars

  Map environmental and industrial chemicals to adverse outcome pathways (AOPs) — molecular initiating event to organ-level toxicity. Uses AOPWiki, GHS class

• tooluniverse-adverse-outcome-pathway · Skill · 1,614 stars

  Map environmental and industrial chemicals to adverse outcome pathways (AOPs) — molecular initiating event to organ-level toxicity. Uses AOPWiki, GHS class

• tooluniverse-aging-senescence · Skill · 1,614 stars

  Aging biology, cellular senescence, and longevity research. Covers senescence markers (p16/CDKN2A, SASP, SA-beta-gal), aging hallmarks, senolytic drug disc

• tooluniverse-aging-senescence · Skill · 1,614 stars

  Aging biology, cellular senescence, and longevity research. Covers senescence markers (p16/CDKN2A, SASP, SA-beta-gal), aging hallmarks, senolytic drug disc

• tooluniverse-aging-senescence · Skill · 1,614 stars

  Aging biology, cellular senescence, and longevity research. Covers senescence markers (p16/CDKN2A, SASP, SA-beta-gal), aging hallmarks, senolytic drug disc

• tooluniverse-antibody-engineering · Skill · 1,614 stars

  Therapeutic antibody engineering and optimization, lead-to-clinical-candidate. Covers sequence humanization (germline alignment, framework retention), affi

• tooluniverse-antibody-engineering · Skill · 1,614 stars

  Therapeutic antibody engineering and optimization, lead-to-clinical-candidate. Covers sequence humanization (germline alignment, framework retention), affi

• tooluniverse-antibody-engineering · Skill · 1,614 stars

  Therapeutic antibody engineering and optimization, lead-to-clinical-candidate. Covers sequence humanization (germline alignment, framework retention), affi

• tooluniverse-antigravity-plugin · Skill · 1,614 stars

  Install, set up, verify, update, pin, uninstall, or troubleshoot the ToolUniverse plugin on Google Antigravity (AGY / Antigravity IDE / Antigravity 2.0). A

• tooluniverse-antigravity-plugin · Skill · 1,614 stars

  Install, set up, verify, update, pin, uninstall, or troubleshoot the ToolUniverse plugin on Google Antigravity (AGY / Antigravity IDE / Antigravity 2.0). A

• tooluniverse-binder-discovery · Skill · 1,614 stars

  Discover novel small-molecule binders for protein targets using structure-based and ligand-based screening. Covers druggability assessment, known-ligand mi

• tooluniverse-binder-discovery · Skill · 1,614 stars

  Discover novel small-molecule binders for protein targets using structure-based and ligand-based screening. Covers druggability assessment, known-ligand mi

• tooluniverse-binder-discovery · Skill · 1,614 stars

  Discover novel small-molecule binders for protein targets using structure-based and ligand-based screening. Covers druggability assessment, known-ligand mi

• tooluniverse-biomedical-fact-lookup · Skill · 1,614 stars

  Answer biomedical FACTUAL / recall / multiple-choice questions by querying ToolUniverse database tools instead of answering from memory. Triggers on any 'w

• tooluniverse-biomedical-fact-lookup · Skill · 1,614 stars

  Answer biomedical FACTUAL / recall / multiple-choice questions by querying ToolUniverse database tools instead of answering from memory. Triggers on any 'w

• tooluniverse-biomedical-fact-lookup · Skill · 1,614 stars

  Answer biomedical FACTUAL / recall / multiple-choice questions by querying ToolUniverse database tools instead of answering from memory. Triggers on any 'w

• tooluniverse-cancer-classification · Skill · 1,614 stars

  Translate free-text tumor descriptions to OncoTree codes and resolve cancer subtypes/tissue hierarchy. Cross-references UMLS/NCI vocabularies. Use for stan

• tooluniverse-cancer-classification · Skill · 1,614 stars

  Translate free-text tumor descriptions to OncoTree codes and resolve cancer subtypes/tissue hierarchy. Cross-references UMLS/NCI vocabularies. Use for stan

• tooluniverse-cancer-classification · Skill · 1,614 stars

  Translate free-text tumor descriptions to OncoTree codes and resolve cancer subtypes/tissue hierarchy. Cross-references UMLS/NCI vocabularies. Use for stan

• tooluniverse-cancer-genomics-tcga · Skill · 1,614 stars

  TCGA/GDC cancer genomics analysis — cohort construction, clinical metadata retrieval, somatic mutation frequencies, survival analysis, and multi-omics inte

• tooluniverse-cancer-genomics-tcga · Skill · 1,614 stars

  TCGA/GDC cancer genomics analysis — cohort construction, clinical metadata retrieval, somatic mutation frequencies, survival analysis, and multi-omics inte

• tooluniverse-cancer-genomics-tcga · Skill · 1,614 stars

  TCGA/GDC cancer genomics analysis — cohort construction, clinical metadata retrieval, somatic mutation frequencies, survival analysis, and multi-omics inte

• tooluniverse-cancer-variant-interpretation · Skill · 1,614 stars

  Clinical interpretation of somatic cancer mutations for precision oncology. Transforms a gene + variant + cancer-type input into an actionable report: clin

• tooluniverse-cancer-variant-interpretation · Skill · 1,614 stars

  Clinical interpretation of somatic cancer mutations for precision oncology. Transforms a gene + variant + cancer-type input into an actionable report: clin

• tooluniverse-cancer-variant-interpretation · Skill · 1,614 stars

  Clinical interpretation of somatic cancer mutations for precision oncology. Transforms a gene + variant + cancer-type input into an actionable report: clin

• tooluniverse-cell-line-profiling · Skill · 1,614 stars

  Cancer cell-line selection and profiling for experimental model choice. Cross-references DepMap, Cellosaurus, COSMIC, PharmacoDB to deliver identity verifi

• tooluniverse-cell-line-profiling · Skill · 1,614 stars

  Cancer cell-line selection and profiling for experimental model choice. Cross-references DepMap, Cellosaurus, COSMIC, PharmacoDB to deliver identity verifi

• tooluniverse-cell-line-profiling · Skill · 1,614 stars

  Cancer cell-line selection and profiling for experimental model choice. Cross-references DepMap, Cellosaurus, COSMIC, PharmacoDB to deliver identity verifi

• tooluniverse-chemical-compound-retrieval · Skill · 1,614 stars

  Retrieve chemical compound data from PubChem and ChEMBL with disambiguation, cross-referencing, and stereochemistry handling. Use for resolving compound na

• tooluniverse-chemical-compound-retrieval · Skill · 1,614 stars

  Retrieve chemical compound data from PubChem and ChEMBL with disambiguation, cross-referencing, and stereochemistry handling. Use for resolving compound na

• tooluniverse-chemical-compound-retrieval · Skill · 1,614 stars

  Retrieve chemical compound data from PubChem and ChEMBL with disambiguation, cross-referencing, and stereochemistry handling. Use for resolving compound na

• tooluniverse-chemical-safety · Skill · 1,614 stars

  Chemical safety and toxicology assessment integrating ADMET-AI predictions, CTD toxicogenomics, PubChemTox experimental data, GHS/IARC hazard classificatio

• tooluniverse-chemical-safety · Skill · 1,614 stars

  Chemical safety and toxicology assessment integrating ADMET-AI predictions, CTD toxicogenomics, PubChemTox experimental data, GHS/IARC hazard classificatio

• tooluniverse-chemical-safety · Skill · 1,614 stars

  Chemical safety and toxicology assessment integrating ADMET-AI predictions, CTD toxicogenomics, PubChemTox experimental data, GHS/IARC hazard classificatio

• tooluniverse-chemical-sourcing · Skill · 1,614 stars

  Find commercial sources for chemical compounds — PubChem/ChEMBL identity resolution then vendor catalog search across ZINC, Enamine, eMolecules, Mcule. Com

• tooluniverse-chemical-sourcing · Skill · 1,614 stars

  Find commercial sources for chemical compounds — PubChem/ChEMBL identity resolution then vendor catalog search across ZINC, Enamine, eMolecules, Mcule. Com

• tooluniverse-chemical-sourcing · Skill · 1,614 stars

  Find commercial sources for chemical compounds — PubChem/ChEMBL identity resolution then vendor catalog search across ZINC, Enamine, eMolecules, Mcule. Com

• tooluniverse-claude-code-plugin · Skill · 1,614 stars

  Install the ToolUniverse Claude Code plugin in one step — provides MCP server with 1000+ scientific tools, 120+ research skills, slash commands, hooks, and

• tooluniverse-claude-code-plugin · Skill · 1,614 stars

  Install the ToolUniverse Claude Code plugin in one step — provides MCP server with 1000+ scientific tools, 120+ research skills, slash commands, hooks, and

• tooluniverse-clinical-data-integration · Skill · 1,614 stars

  End-to-end drug safety review integrating FDA labels, FAERS adverse event reports, PRR/ROR disproportionality, pharmacogenomic biomarkers, clinical trial d

• tooluniverse-clinical-data-integration · Skill · 1,614 stars

  End-to-end drug safety review integrating FDA labels, FAERS adverse event reports, PRR/ROR disproportionality, pharmacogenomic biomarkers, clinical trial d

• tooluniverse-clinical-data-integration · Skill · 1,614 stars

  End-to-end drug safety review integrating FDA labels, FAERS adverse event reports, PRR/ROR disproportionality, pharmacogenomic biomarkers, clinical trial d

• tooluniverse-clinical-guidelines · Skill · 1,614 stars

  Search and retrieve clinical practice guidelines from 12+ authoritative sources — NICE, WHO, NCCN, AHA, ADA, SIGN, USPSTF, IDSA, NIH consensus, ESMO/ESC/EA

• tooluniverse-clinical-guidelines · Skill · 1,614 stars

  Search and retrieve clinical practice guidelines from 12+ authoritative sources — NICE, WHO, NCCN, AHA, ADA, SIGN, USPSTF, IDSA, NIH consensus, ESMO/ESC/EA

• tooluniverse-clinical-guidelines · Skill · 1,614 stars

  Search and retrieve clinical practice guidelines from 12+ authoritative sources — NICE, WHO, NCCN, AHA, ADA, SIGN, USPSTF, IDSA, NIH consensus, ESMO/ESC/EA

• tooluniverse-clinical-risk-scoring · Skill · 1,614 stars

  Compute and interpret validated bedside clinical risk scores and pretest probabilities for an INDIVIDUAL patient — pick the right score for the scenario, g

• tooluniverse-clinical-risk-scoring · Skill · 1,614 stars

  Compute and interpret validated bedside clinical risk scores and pretest probabilities for an INDIVIDUAL patient — pick the right score for the scenario, g

• tooluniverse-clinical-risk-scoring · Skill · 1,614 stars

  Compute and interpret validated bedside clinical risk scores and pretest probabilities for an INDIVIDUAL patient — pick the right score for the scenario, g

• tooluniverse-clinical-trial-design · Skill · 1,614 stars

  Strategic clinical trial design feasibility assessment. Analyzes 6 dimensions (endpoint, population, comparator, effect size, duration, regulatory pathway)

• tooluniverse-clinical-trial-design · Skill · 1,614 stars

  Strategic clinical trial design feasibility assessment. Analyzes 6 dimensions (endpoint, population, comparator, effect size, duration, regulatory pathway)

• tooluniverse-clinical-trial-design · Skill · 1,614 stars

  Strategic clinical trial design feasibility assessment. Analyzes 6 dimensions (endpoint, population, comparator, effect size, duration, regulatory pathway)

• tooluniverse-clinical-trial-matching · Skill · 1,614 stars

  AI-driven patient-to-trial matching for precision oncology and rare-disease care. Transforms a patient's molecular profile (mutations, biomarkers, expressi

• tooluniverse-clinical-trial-matching · Skill · 1,614 stars

  AI-driven patient-to-trial matching for precision oncology and rare-disease care. Transforms a patient's molecular profile (mutations, biomarkers, expressi

• tooluniverse-clinical-trial-matching · Skill · 1,614 stars

  AI-driven patient-to-trial matching for precision oncology and rare-disease care. Transforms a patient's molecular profile (mutations, biomarkers, expressi

• tooluniverse-codex-plugin · Skill · 1,614 stars

  Install, set up, verify, update, pin, uninstall, or troubleshoot the ToolUniverse plugin on OpenAI Codex. ALWAYS consult this skill for any of those — don'

• tooluniverse-codex-plugin · Skill · 1,614 stars

  Install, set up, verify, update, pin, uninstall, or troubleshoot the ToolUniverse plugin on OpenAI Codex. ALWAYS consult this skill for any of those — don'

• tooluniverse-comparative-genomics · Skill · 1,614 stars

  Cross-species gene comparison and ortholog analysis. Integrates Ensembl Compara orthologs, NCBI Gene, UniProt, OLS, Monarch, and OpenTargets to identify or

• tooluniverse-comparative-genomics · Skill · 1,614 stars

  Cross-species gene comparison and ortholog analysis. Integrates Ensembl Compara orthologs, NCBI Gene, UniProt, OLS, Monarch, and OpenTargets to identify or

• tooluniverse-comparative-genomics · Skill · 1,614 stars

  Cross-species gene comparison and ortholog analysis. Integrates Ensembl Compara orthologs, NCBI Gene, UniProt, OLS, Monarch, and OpenTargets to identify or

• tooluniverse-computational-biophysics · Skill · 1,614 stars

  Solve quantitative problems in biophysics — pharmacokinetics (PK volume of distribution, clearance, half-life), epidemiology (R0, attack rate), toxicology

• tooluniverse-computational-biophysics · Skill · 1,614 stars

  Solve quantitative problems in biophysics — pharmacokinetics (PK volume of distribution, clearance, half-life), epidemiology (R0, attack rate), toxicology

• tooluniverse-computational-biophysics · Skill · 1,614 stars

  Solve quantitative problems in biophysics — pharmacokinetics (PK volume of distribution, clearance, half-life), epidemiology (R0, attack rate), toxicology

• tooluniverse-crispr-screen-analysis · Skill · 1,614 stars

  Analyze CRISPR-Cas9 genetic screens — MAGeCK gene-level scores, sgRNA count QC, replicate correlation, hit prioritization, and pathway GSEA on screen outpu

• tooluniverse-crispr-screen-analysis · Skill · 1,614 stars

  Analyze CRISPR-Cas9 genetic screens — MAGeCK gene-level scores, sgRNA count QC, replicate correlation, hit prioritization, and pathway GSEA on screen outpu

• tooluniverse-crispr-screen-analysis · Skill · 1,614 stars

  Analyze CRISPR-Cas9 genetic screens — MAGeCK gene-level scores, sgRNA count QC, replicate correlation, hit prioritization, and pathway GSEA on screen outpu

• tooluniverse-cs-setup · Skill · 1,614 stars

  Install or update ToolUniverse in Claude Science — create the conda env, install the tooluniverse pip package, and (re)build the tooluniverse-research skil

• tooluniverse-custom-tool · Skill · 1,614 stars

  Add custom local tools to ToolUniverse alongside the 1000+ built-in tools. Covers JSON-config tools (simplest, no code), Python class tools (REST/SOAP/Grap

• tooluniverse-custom-tool · Skill · 1,614 stars

  Add custom local tools to ToolUniverse alongside the 1000+ built-in tools. Covers JSON-config tools (simplest, no code), Python class tools (REST/SOAP/Grap

• tooluniverse-custom-tool · Skill · 1,614 stars

  Add custom local tools to ToolUniverse alongside the 1000+ built-in tools. Covers JSON-config tools (simplest, no code), Python class tools (REST/SOAP/Grap

• tooluniverse-data-integration-analysis · Skill · 1,614 stars

  Integrate computed statistical results (DEGs, GWAS hits, associations) with biological context from ToolUniverse databases (UniProt, GO, Reactome, ClinVar,

• tooluniverse-data-integration-analysis · Skill · 1,614 stars

  Integrate computed statistical results (DEGs, GWAS hits, associations) with biological context from ToolUniverse databases (UniProt, GO, Reactome, ClinVar,

• tooluniverse-data-integration-analysis · Skill · 1,614 stars

  Integrate computed statistical results (DEGs, GWAS hits, associations) with biological context from ToolUniverse databases (UniProt, GO, Reactome, ClinVar,

• tooluniverse-data-wrangling · Skill · 1,614 stars

  Universal data access patterns for downloading and parsing scientific data when ToolUniverse tools don't cover the source, only return metadata, or you nee

• tooluniverse-data-wrangling · Skill · 1,614 stars

  Universal data access patterns for downloading and parsing scientific data when ToolUniverse tools don't cover the source, only return metadata, or you nee

• tooluniverse-data-wrangling · Skill · 1,614 stars

  Universal data access patterns for downloading and parsing scientific data when ToolUniverse tools don't cover the source, only return metadata, or you nee

• tooluniverse-dataset-discovery · Skill · 1,614 stars

  Find and evaluate research datasets for any scientific question. Maps research questions to required study designs (longitudinal vs cross-sectional, observ

• tooluniverse-dataset-discovery · Skill · 1,614 stars

  Find and evaluate research datasets for any scientific question. Maps research questions to required study designs (longitudinal vs cross-sectional, observ

• tooluniverse-dataset-discovery · Skill · 1,614 stars

  Find and evaluate research datasets for any scientific question. Maps research questions to required study designs (longitudinal vs cross-sectional, observ

• tooluniverse-diagnostic-test-evaluation · Skill · 1,614 stars

  Diagnostic test / biomarker accuracy — sensitivity, specificity, PPV, NPV, likelihood ratios, accuracy from a 2x2 table; ROC curve, AUC, and the optimal cu

• tooluniverse-diagnostic-test-evaluation · Skill · 1,614 stars

  Diagnostic test / biomarker accuracy — sensitivity, specificity, PPV, NPV, likelihood ratios, accuracy from a 2x2 table; ROC curve, AUC, and the optimal cu

• tooluniverse-diagnostic-test-evaluation · Skill · 1,614 stars

  Diagnostic test / biomarker accuracy — sensitivity, specificity, PPV, NPV, likelihood ratios, accuracy from a 2x2 table; ROC curve, AUC, and the optimal cu

• tooluniverse-disease-research · Skill · 1,614 stars

  Generate comprehensive disease research reports covering genetics (causal genes, GWAS, OMIM), pathways (Reactome, KEGG), drugs (existing therapies, repurpo

• tooluniverse-disease-research · Skill · 1,614 stars

  Generate comprehensive disease research reports covering genetics (causal genes, GWAS, OMIM), pathways (Reactome, KEGG), drugs (existing therapies, repurpo

• tooluniverse-disease-research · Skill · 1,614 stars

  Generate comprehensive disease research reports covering genetics (causal genes, GWAS, OMIM), pathways (Reactome, KEGG), drugs (existing therapies, repurpo

• tooluniverse-dose-response · Skill · 1,614 stars

  Dose-response / concentration-response curve fitting — IC50, EC50, Hill slope, Emax/Emin efficacy, and relative potency from paired concentration vs respon

• tooluniverse-dose-response · Skill · 1,614 stars

  Dose-response / concentration-response curve fitting — IC50, EC50, Hill slope, Emax/Emin efficacy, and relative potency from paired concentration vs respon

• tooluniverse-dose-response · Skill · 1,614 stars

  Dose-response / concentration-response curve fitting — IC50, EC50, Hill slope, Emax/Emin efficacy, and relative potency from paired concentration vs respon

• tooluniverse-drug-drug-interaction · Skill · 1,614 stars

  Assess drug-drug interactions — CYP metabolic interactions (substrate/inhibitor/inducer), transporter (P-gp, BCRP, OATP) effects, pharmacodynamic synergy/a

• tooluniverse-drug-drug-interaction · Skill · 1,614 stars

  Assess drug-drug interactions — CYP metabolic interactions (substrate/inhibitor/inducer), transporter (P-gp, BCRP, OATP) effects, pharmacodynamic synergy/a

• tooluniverse-drug-drug-interaction · Skill · 1,614 stars

  Assess drug-drug interactions — CYP metabolic interactions (substrate/inhibitor/inducer), transporter (P-gp, BCRP, OATP) effects, pharmacodynamic synergy/a

• tooluniverse-drug-mechanism-research · Skill · 1,614 stars

  Trace drug mechanism of action — primary target → downstream signaling → pathway perturbation → tissue/organ effect → clinical outcome. Uses DrugBank, ChEM

• tooluniverse-drug-mechanism-research · Skill · 1,614 stars

  Trace drug mechanism of action — primary target → downstream signaling → pathway perturbation → tissue/organ effect → clinical outcome. Uses DrugBank, ChEM

• tooluniverse-drug-mechanism-research · Skill · 1,614 stars

  Trace drug mechanism of action — primary target → downstream signaling → pathway perturbation → tissue/organ effect → clinical outcome. Uses DrugBank, ChEM

• tooluniverse-drug-regulatory · Skill · 1,614 stars

  Drug regulatory and approval research — FDA substance registry, ATC/EPC classification, EMA decisions, generic-drug status, FDA Orange Book exclusivity, ND

• tooluniverse-drug-regulatory · Skill · 1,614 stars

  Drug regulatory and approval research — FDA substance registry, ATC/EPC classification, EMA decisions, generic-drug status, FDA Orange Book exclusivity, ND

• tooluniverse-drug-regulatory · Skill · 1,614 stars

  Drug regulatory and approval research — FDA substance registry, ATC/EPC classification, EMA decisions, generic-drug status, FDA Orange Book exclusivity, ND

• tooluniverse-drug-repurposing · Skill · 1,614 stars

  Identify drug repurposing candidates via target-based, compound-based, and disease-based strategies. Combines drug-target-disease network reasoning with me

• tooluniverse-drug-repurposing · Skill · 1,614 stars

  Identify drug repurposing candidates via target-based, compound-based, and disease-based strategies. Combines drug-target-disease network reasoning with me

• tooluniverse-drug-repurposing · Skill · 1,614 stars

  Identify drug repurposing candidates via target-based, compound-based, and disease-based strategies. Combines drug-target-disease network reasoning with me

• tooluniverse-drug-research · Skill · 1,614 stars

  Comprehensive drug profiling — mechanism, primary/secondary targets, drug interactions, clinical-trial status, adverse events (FAERS), pharmacogenomics, an

• tooluniverse-drug-research · Skill · 1,614 stars

  Comprehensive drug profiling — mechanism, primary/secondary targets, drug interactions, clinical-trial status, adverse events (FAERS), pharmacogenomics, an

• tooluniverse-drug-research · Skill · 1,614 stars

  Comprehensive drug profiling — mechanism, primary/secondary targets, drug interactions, clinical-trial status, adverse events (FAERS), pharmacogenomics, an

• tooluniverse-drug-synergy · Skill · 1,614 stars

  Drug-combination synergy analysis — quantify whether two drugs together are synergistic, additive, or antagonistic using the standard reference models (Bli

• tooluniverse-drug-synergy · Skill · 1,614 stars

  Drug-combination synergy analysis — quantify whether two drugs together are synergistic, additive, or antagonistic using the standard reference models (Bli

• tooluniverse-drug-synergy · Skill · 1,614 stars

  Drug-combination synergy analysis — quantify whether two drugs together are synergistic, additive, or antagonistic using the standard reference models (Bli

• tooluniverse-drug-target-validation · Skill · 1,614 stars

  Quantitative drug-target validation pipeline. Scores druggability, selectivity, safety profile, ADMET feasibility, and structural tractability with a compo

• tooluniverse-drug-target-validation · Skill · 1,614 stars

  Quantitative drug-target validation pipeline. Scores druggability, selectivity, safety profile, ADMET feasibility, and structural tractability with a compo

• tooluniverse-drug-target-validation · Skill · 1,614 stars

  Quantitative drug-target validation pipeline. Scores druggability, selectivity, safety profile, ADMET feasibility, and structural tractability with a compo

• tooluniverse-ecology-biodiversity · Skill · 1,614 stars

  Ecology, biodiversity, and conservation biology research — species identification (GBIF, NCBI Taxonomy), invasive species impact, ecosystem dynamics, conse

• tooluniverse-ecology-biodiversity · Skill · 1,614 stars

  Ecology, biodiversity, and conservation biology research — species identification (GBIF, NCBI Taxonomy), invasive species impact, ecosystem dynamics, conse

• tooluniverse-ecology-biodiversity · Skill · 1,614 stars

  Ecology, biodiversity, and conservation biology research — species identification (GBIF, NCBI Taxonomy), invasive species impact, ecosystem dynamics, conse

• tooluniverse-electron-microscopy · Skill · 1,614 stars

  Search and analyze electron microscopy data — cryo-EM density maps (EMDB), fitted atomic models (PDB), raw micrograph datasets (EMPIAR), and cryo-electron

• tooluniverse-electron-microscopy · Skill · 1,614 stars

  Search and analyze electron microscopy data — cryo-EM density maps (EMDB), fitted atomic models (PDB), raw micrograph datasets (EMPIAR), and cryo-electron

• tooluniverse-electron-microscopy · Skill · 1,614 stars

  Search and analyze electron microscopy data — cryo-EM density maps (EMDB), fitted atomic models (PDB), raw micrograph datasets (EMPIAR), and cryo-electron

• tooluniverse-enzyme-kinetics · Skill · 1,614 stars

  Enzyme kinetics — Michaelis-Menten Km, Vmax, kcat (turnover), and kcat/Km (catalytic efficiency / specificity constant) from substrate-velocity data, plus

• tooluniverse-enzyme-kinetics · Skill · 1,614 stars

  Enzyme kinetics — Michaelis-Menten Km, Vmax, kcat (turnover), and kcat/Km (catalytic efficiency / specificity constant) from substrate-velocity data, plus

• tooluniverse-enzyme-kinetics · Skill · 1,614 stars

  Enzyme kinetics — Michaelis-Menten Km, Vmax, kcat (turnover), and kcat/Km (catalytic efficiency / specificity constant) from substrate-velocity data, plus

• tooluniverse-epidemiological-analysis · Skill · 1,614 stars

  End-to-end observational epidemiology analysis — from research question (PECO Population/Exposure/Comparator/Outcome) to publication-ready statistical repo

• tooluniverse-epidemiological-analysis · Skill · 1,614 stars

  End-to-end observational epidemiology analysis — from research question (PECO Population/Exposure/Comparator/Outcome) to publication-ready statistical repo

• tooluniverse-epidemiological-analysis · Skill · 1,614 stars

  End-to-end observational epidemiology analysis — from research question (PECO Population/Exposure/Comparator/Outcome) to publication-ready statistical repo

• tooluniverse-epigenomics · Skill · 1,614 stars

  Genomics and epigenomics analysis: DNA methylation (CpG, 5mC, 5hmC, bisulfite, RRBS), m6A RNA modification (MeRIP-seq), ChIP-seq peaks, ATAC-seq accessibil

• tooluniverse-epigenomics · Skill · 1,614 stars

  Genomics and epigenomics analysis: DNA methylation (CpG, 5mC, 5hmC, bisulfite, RRBS), m6A RNA modification (MeRIP-seq), ChIP-seq peaks, ATAC-seq accessibil

• tooluniverse-epigenomics · Skill · 1,614 stars

  Genomics and epigenomics analysis: DNA methylation (CpG, 5mC, 5hmC, bisulfite, RRBS), m6A RNA modification (MeRIP-seq), ChIP-seq peaks, ATAC-seq accessibil

• tooluniverse-epigenomics-chromatin · Skill · 1,614 stars

  Histone-modification ChIP-seq, ATAC-seq accessibility, chromatin state, and TF binding analysis from ENCODE, Roadmap Epigenomics, ChIP-Atlas. Use for chrom

• tooluniverse-epigenomics-chromatin · Skill · 1,614 stars

  Histone-modification ChIP-seq, ATAC-seq accessibility, chromatin state, and TF binding analysis from ENCODE, Roadmap Epigenomics, ChIP-Atlas. Use for chrom

• tooluniverse-epigenomics-chromatin · Skill · 1,614 stars

  Histone-modification ChIP-seq, ATAC-seq accessibility, chromatin state, and TF binding analysis from ENCODE, Roadmap Epigenomics, ChIP-Atlas. Use for chrom

• tooluniverse-expression-data-retrieval · Skill · 1,614 stars

  Retrieve gene expression and omics datasets from ArrayExpress and BioStudies with gene disambiguation and quality assessment. Use for finding RNA-seq/micro

• tooluniverse-expression-data-retrieval · Skill · 1,614 stars

  Retrieve gene expression and omics datasets from ArrayExpress and BioStudies with gene disambiguation and quality assessment. Use for finding RNA-seq/micro

• tooluniverse-expression-data-retrieval · Skill · 1,614 stars

  Retrieve gene expression and omics datasets from ArrayExpress and BioStudies with gene disambiguation and quality assessment. Use for finding RNA-seq/micro

• tooluniverse-fastq-qc · Skill · 1,614 stars

  FASTQ quality control and adapter/quality-trimming decisions with local NGS tools — run FastQC on raw reads, summarize a project with MultiQC, interpret pe

• tooluniverse-fastq-qc · Skill · 1,614 stars

  FASTQ quality control and adapter/quality-trimming decisions with local NGS tools — run FastQC on raw reads, summarize a project with MultiQC, interpret pe

• tooluniverse-fastq-qc · Skill · 1,614 stars

  FASTQ quality control and adapter/quality-trimming decisions with local NGS tools — run FastQC on raw reads, summarize a project with MultiQC, interpret pe

• tooluniverse-functional-genomics-screens · Skill · 1,614 stars

  Interpret hits from CRISPR-KO/CRISPRi/shRNA screens by integrating DepMap essentiality, gnomAD constraint scores, pathway context (Reactome, STRING), drugg

• tooluniverse-functional-genomics-screens · Skill · 1,614 stars

  Interpret hits from CRISPR-KO/CRISPRi/shRNA screens by integrating DepMap essentiality, gnomAD constraint scores, pathway context (Reactome, STRING), drugg

• tooluniverse-functional-genomics-screens · Skill · 1,614 stars

  Interpret hits from CRISPR-KO/CRISPRi/shRNA screens by integrating DepMap essentiality, gnomAD constraint scores, pathway context (Reactome, STRING), drugg

• tooluniverse-gene-disease-association · Skill · 1,614 stars

  Gene-disease association analysis across DisGeNET, OpenTargets, Monarch, OMIM, GenCC, Orphanet. Cross-references multiple sources for evidence-graded assoc

• tooluniverse-gene-disease-association · Skill · 1,614 stars

  Gene-disease association analysis across DisGeNET, OpenTargets, Monarch, OMIM, GenCC, Orphanet. Cross-references multiple sources for evidence-graded assoc

• tooluniverse-gene-disease-association · Skill · 1,614 stars

  Gene-disease association analysis across DisGeNET, OpenTargets, Monarch, OMIM, GenCC, Orphanet. Cross-references multiple sources for evidence-graded assoc

• tooluniverse-gene-enrichment · Skill · 1,614 stars

  Gene-set enrichment analysis — GO (Biological Process, Molecular Function, Cellular Component), KEGG, Reactome pathway enrichment via clusterProfiler, gsea

• tooluniverse-gene-enrichment · Skill · 1,614 stars

  Gene-set enrichment analysis — GO (Biological Process, Molecular Function, Cellular Component), KEGG, Reactome pathway enrichment via clusterProfiler, gsea

• tooluniverse-gene-enrichment · Skill · 1,614 stars

  Gene-set enrichment analysis — GO (Biological Process, Molecular Function, Cellular Component), KEGG, Reactome pathway enrichment via clusterProfiler, gsea

• tooluniverse-gene-liability · Skill · 1,614 stars

  Evaluate the human safety liability of knocking down, knocking out, degrading, or pharmacologically inhibiting a gene. Use for gene safety scoring, on-targ

• tooluniverse-gene-liability · Skill · 1,614 stars

  Evaluate the human safety liability of knocking down, knocking out, degrading, or pharmacologically inhibiting a gene. Use for gene safety scoring, on-targ

• tooluniverse-gene-liability · Skill · 1,614 stars

  Evaluate the human safety liability of knocking down, knocking out, degrading, or pharmacologically inhibiting a gene. Use for gene safety scoring, on-targ

• tooluniverse-gene-regulatory-networks · Skill · 1,614 stars

  Gene regulatory network analysis — TF-target inference (JASPAR motifs, ChIP-seq), motif scanning, eQTL integration, perturbation evidence (knockout/overexp

• tooluniverse-gene-regulatory-networks · Skill · 1,614 stars

  Gene regulatory network analysis — TF-target inference (JASPAR motifs, ChIP-seq), motif scanning, eQTL integration, perturbation evidence (knockout/overexp

• tooluniverse-gene-regulatory-networks · Skill · 1,614 stars

  Gene regulatory network analysis — TF-target inference (JASPAR motifs, ChIP-seq), motif scanning, eQTL integration, perturbation evidence (knockout/overexp

• tooluniverse-gpcr-structural-pharmacology · Skill · 1,614 stars

  GPCR receptor pharmacology — agonist/antagonist/inverse-agonist/biased-agonist classification, GPCRdb structural data, receptor-ligand binding analysis, an

• tooluniverse-gpcr-structural-pharmacology · Skill · 1,614 stars

  GPCR receptor pharmacology — agonist/antagonist/inverse-agonist/biased-agonist classification, GPCRdb structural data, receptor-ligand binding analysis, an

• tooluniverse-gpcr-structural-pharmacology · Skill · 1,614 stars

  GPCR receptor pharmacology — agonist/antagonist/inverse-agonist/biased-agonist classification, GPCRdb structural data, receptor-ligand binding analysis, an

• tooluniverse-gwas-drug-discovery · Skill · 1,614 stars

  Transform GWAS signals into drug targets and repurposing opportunities. Connects GWAS-significant loci to causal genes via fine-mapping/eQTL, then to drugg

• tooluniverse-gwas-drug-discovery · Skill · 1,614 stars

  Transform GWAS signals into drug targets and repurposing opportunities. Connects GWAS-significant loci to causal genes via fine-mapping/eQTL, then to drugg

• tooluniverse-gwas-drug-discovery · Skill · 1,614 stars

  Transform GWAS signals into drug targets and repurposing opportunities. Connects GWAS-significant loci to causal genes via fine-mapping/eQTL, then to drugg

• tooluniverse-gwas-finemapping · Skill · 1,614 stars

  Statistical fine-mapping of GWAS loci using credible sets (SuSiE, FINEMAP) and locus-to-gene scoring (Open Targets L2G). Identifies likely causal variants

• tooluniverse-gwas-finemapping · Skill · 1,614 stars

  Statistical fine-mapping of GWAS loci using credible sets (SuSiE, FINEMAP) and locus-to-gene scoring (Open Targets L2G). Identifies likely causal variants

• tooluniverse-gwas-finemapping · Skill · 1,614 stars

  Statistical fine-mapping of GWAS loci using credible sets (SuSiE, FINEMAP) and locus-to-gene scoring (Open Targets L2G). Identifies likely causal variants

• tooluniverse-gwas-snp-interpretation · Skill · 1,614 stars

  Interpret a single GWAS SNP across multiple databases — GWAS Catalog hits, LD/haplotype context, eQTL evidence, regulatory annotation, ClinVar pathogenicit

• tooluniverse-gwas-snp-interpretation · Skill · 1,614 stars

  Interpret a single GWAS SNP across multiple databases — GWAS Catalog hits, LD/haplotype context, eQTL evidence, regulatory annotation, ClinVar pathogenicit

• tooluniverse-gwas-snp-interpretation · Skill · 1,614 stars

  Interpret a single GWAS SNP across multiple databases — GWAS Catalog hits, LD/haplotype context, eQTL evidence, regulatory annotation, ClinVar pathogenicit

• tooluniverse-gwas-study-explorer · Skill · 1,614 stars

  Compare GWAS studies, perform meta-analyses across cohorts, and assess signal replication. Uses GWAS Catalog metadata, study-level statistics, and cross-co

• tooluniverse-gwas-study-explorer · Skill · 1,614 stars

  Compare GWAS studies, perform meta-analyses across cohorts, and assess signal replication. Uses GWAS Catalog metadata, study-level statistics, and cross-co

• tooluniverse-gwas-study-explorer · Skill · 1,614 stars

  Compare GWAS studies, perform meta-analyses across cohorts, and assess signal replication. Uses GWAS Catalog metadata, study-level statistics, and cross-co

• tooluniverse-gwas-trait-to-gene · Skill · 1,614 stars

  Discover causal genes for diseases/traits from GWAS data using Open Targets L2G (locus-to-gene) scoring — integrates eQTL, chromatin interaction, and dista

• tooluniverse-gwas-trait-to-gene · Skill · 1,614 stars

  Discover causal genes for diseases/traits from GWAS data using Open Targets L2G (locus-to-gene) scoring — integrates eQTL, chromatin interaction, and dista

• tooluniverse-gwas-trait-to-gene · Skill · 1,614 stars

  Discover causal genes for diseases/traits from GWAS data using Open Targets L2G (locus-to-gene) scoring — integrates eQTL, chromatin interaction, and dista

• tooluniverse-hla-immunogenomics · Skill · 1,614 stars

  HLA gene-family analysis and MHC-peptide binding for transplant compatibility, vaccine epitope coverage, and cancer immunotherapy. Uses IMGT (HLA polymorph

• tooluniverse-hla-immunogenomics · Skill · 1,614 stars

  HLA gene-family analysis and MHC-peptide binding for transplant compatibility, vaccine epitope coverage, and cancer immunotherapy. Uses IMGT (HLA polymorph

• tooluniverse-hla-immunogenomics · Skill · 1,614 stars

  HLA gene-family analysis and MHC-peptide binding for transplant compatibility, vaccine epitope coverage, and cancer immunotherapy. Uses IMGT (HLA polymorph

• tooluniverse-image-analysis · Skill · 1,614 stars

  Microscopy and quantitative imaging analysis — colony morphometry, fluorescence intensity quantification, cell-count statistics, dose-response curves, and

• tooluniverse-image-analysis · Skill · 1,614 stars

  Microscopy and quantitative imaging analysis — colony morphometry, fluorescence intensity quantification, cell-count statistics, dose-response curves, and

• tooluniverse-image-analysis · Skill · 1,614 stars

  Microscopy and quantitative imaging analysis — colony morphometry, fluorescence intensity quantification, cell-count statistics, dose-response curves, and

• tooluniverse-immune-repertoire-analysis · Skill · 1,614 stars

  TCR/BCR repertoire analysis — V(D)J segment usage, CDR3 sequence diversity, clonality scoring, antigen specificity matching to IEDB, public-clone identific

• tooluniverse-immune-repertoire-analysis · Skill · 1,614 stars

  TCR/BCR repertoire analysis — V(D)J segment usage, CDR3 sequence diversity, clonality scoring, antigen specificity matching to IEDB, public-clone identific

• tooluniverse-immune-repertoire-analysis · Skill · 1,614 stars

  TCR/BCR repertoire analysis — V(D)J segment usage, CDR3 sequence diversity, clonality scoring, antigen specificity matching to IEDB, public-clone identific

• tooluniverse-immunology · Skill · 1,614 stars

  Immunology research workflows: antibody-antigen interactions, T/B cell repertoire, MHC/HLA binding prediction, autoimmune disease genetics, vaccine epitope

• tooluniverse-immunology · Skill · 1,614 stars

  Immunology research workflows: antibody-antigen interactions, T/B cell repertoire, MHC/HLA binding prediction, autoimmune disease genetics, vaccine epitope

• tooluniverse-immunology · Skill · 1,614 stars

  Immunology research workflows: antibody-antigen interactions, T/B cell repertoire, MHC/HLA binding prediction, autoimmune disease genetics, vaccine epitope

• tooluniverse-immunotherapy-response-prediction · Skill · 1,614 stars

  Predict patient response to immune checkpoint inhibitors (ICIs) by integrating tumor mutational burden (TMB), microsatellite instability (MSI), PD-L1 expre

• tooluniverse-immunotherapy-response-prediction · Skill · 1,614 stars

  Predict patient response to immune checkpoint inhibitors (ICIs) by integrating tumor mutational burden (TMB), microsatellite instability (MSI), PD-L1 expre

• tooluniverse-immunotherapy-response-prediction · Skill · 1,614 stars

  Predict patient response to immune checkpoint inhibitors (ICIs) by integrating tumor mutational burden (TMB), microsatellite instability (MSI), PD-L1 expre

• tooluniverse-infectious-disease · Skill · 1,614 stars

  Rapid pathogen characterization and drug repurposing for outbreaks. Combines pathogen genomics (NCBI, BVBRC), host immune response (IEDB), drug-target data

• tooluniverse-infectious-disease · Skill · 1,614 stars

  Rapid pathogen characterization and drug repurposing for outbreaks. Combines pathogen genomics (NCBI, BVBRC), host immune response (IEDB), drug-target data

• tooluniverse-infectious-disease · Skill · 1,614 stars

  Rapid pathogen characterization and drug repurposing for outbreaks. Combines pathogen genomics (NCBI, BVBRC), host immune response (IEDB), drug-target data

• tooluniverse-inorganic-physical-chemistry · Skill · 1,614 stars

  Inorganic chemistry, physical chemistry, and materials science — crystal structures, coordination chemistry, lattice parameters, thermodynamic properties,

• tooluniverse-inorganic-physical-chemistry · Skill · 1,614 stars

  Inorganic chemistry, physical chemistry, and materials science — crystal structures, coordination chemistry, lattice parameters, thermodynamic properties,

• tooluniverse-inorganic-physical-chemistry · Skill · 1,614 stars

  Inorganic chemistry, physical chemistry, and materials science — crystal structures, coordination chemistry, lattice parameters, thermodynamic properties,

• tooluniverse-install-skills · Skill · 1,614 stars

  Detect and auto-install missing ToolUniverse research skills. Checks common Claude Code/Cursor/Codex skill directories for the canary file, and installs an

• tooluniverse-install-skills · Skill · 1,614 stars

  Detect and auto-install missing ToolUniverse research skills. Checks common Claude Code/Cursor/Codex skill directories for the canary file, and installs an

• tooluniverse-install-skills · Skill · 1,614 stars

  Detect and auto-install missing ToolUniverse research skills. Checks common Claude Code/Cursor/Codex skill directories for the canary file, and installs an

• tooluniverse-kegg-disease-drug · Skill · 1,614 stars

  KEGG-based disease-drug-variant network research. Connects diseases to causal genes, drugs to molecular targets, and variants to pathways using KEGG's edit

• tooluniverse-kegg-disease-drug · Skill · 1,614 stars

  KEGG-based disease-drug-variant network research. Connects diseases to causal genes, drugs to molecular targets, and variants to pathways using KEGG's edit

• tooluniverse-kegg-disease-drug · Skill · 1,614 stars

  KEGG-based disease-drug-variant network research. Connects diseases to causal genes, drugs to molecular targets, and variants to pathways using KEGG's edit

• tooluniverse-lipidomics · Skill · 1,614 stars

  Lipid analysis and lipid-disease associations using LIPID MAPS classification, HMDB metabolite data, KEGG/Reactome lipid pathways (sphingolipid, eicosanoid

• tooluniverse-lipidomics · Skill · 1,614 stars

  Lipid analysis and lipid-disease associations using LIPID MAPS classification, HMDB metabolite data, KEGG/Reactome lipid pathways (sphingolipid, eicosanoid

• tooluniverse-lipidomics · Skill · 1,614 stars

  Lipid analysis and lipid-disease associations using LIPID MAPS classification, HMDB metabolite data, KEGG/Reactome lipid pathways (sphingolipid, eicosanoid

• tooluniverse-literature-deep-research · Skill · 1,614 stars

  Deep literature review — PubMed, EuropePMC, bioRxiv preprints, citation networks, evidence synthesis. Disambiguates queries, runs collision-aware searches,

• tooluniverse-literature-deep-research · Skill · 1,614 stars

  Deep literature review — PubMed, EuropePMC, bioRxiv preprints, citation networks, evidence synthesis. Disambiguates queries, runs collision-aware searches,

• tooluniverse-literature-deep-research · Skill · 1,614 stars

  Deep literature review — PubMed, EuropePMC, bioRxiv preprints, citation networks, evidence synthesis. Disambiguates queries, runs collision-aware searches,

• tooluniverse-mendelian-randomization · Skill · 1,614 stars

  Mendelian randomization (MR) causal inference — does an exposure, risk factor, or biomarker CAUSALLY affect a disease/outcome, using genetic variants as in

• tooluniverse-mendelian-randomization · Skill · 1,614 stars

  Mendelian randomization (MR) causal inference — does an exposure, risk factor, or biomarker CAUSALLY affect a disease/outcome, using genetic variants as in

• tooluniverse-mendelian-randomization · Skill · 1,614 stars

  Mendelian randomization (MR) causal inference — does an exposure, risk factor, or biomarker CAUSALLY affect a disease/outcome, using genetic variants as in

• tooluniverse-meta-analysis · Skill · 1,614 stars

  Meta-analysis / evidence synthesis — pool effect sizes across studies (odds ratios, risk ratios, hazard ratios, mean differences, correlations, GWAS betas)

• tooluniverse-meta-analysis · Skill · 1,614 stars

  Meta-analysis / evidence synthesis — pool effect sizes across studies (odds ratios, risk ratios, hazard ratios, mean differences, correlations, GWAS betas)

• tooluniverse-meta-analysis · Skill · 1,614 stars

  Meta-analysis / evidence synthesis — pool effect sizes across studies (odds ratios, risk ratios, hazard ratios, mean differences, correlations, GWAS betas)

• tooluniverse-metabolomics · Skill · 1,614 stars

  Metabolomics research — metabolite identification, study analysis, and database searches across HMDB, MetaboLights, Metabolomics Workbench, KEGG. Use for a

• tooluniverse-metabolomics · Skill · 1,614 stars

  Metabolomics research — metabolite identification, study analysis, and database searches across HMDB, MetaboLights, Metabolomics Workbench, KEGG. Use for a

• tooluniverse-metabolomics · Skill · 1,614 stars

  Metabolomics research — metabolite identification, study analysis, and database searches across HMDB, MetaboLights, Metabolomics Workbench, KEGG. Use for a

• tooluniverse-metabolomics-analysis · Skill · 1,614 stars

  Analyze metabolomics data end-to-end — metabolite identification, quantification (TIC normalization, batch correction), differential analysis, and pathway

• tooluniverse-metabolomics-analysis · Skill · 1,614 stars

  Analyze metabolomics data end-to-end — metabolite identification, quantification (TIC normalization, batch correction), differential analysis, and pathway

• tooluniverse-metabolomics-analysis · Skill · 1,614 stars

  Analyze metabolomics data end-to-end — metabolite identification, quantification (TIC normalization, batch correction), differential analysis, and pathway

• tooluniverse-metabolomics-pathway · Skill · 1,614 stars

  Metabolomics pathway analysis — metabolite identification (HMDB, KEGG, ChEBI), pathway mapping (Reactome, KEGG, MetaCyc), disease associations, enzyme/gene

• tooluniverse-metabolomics-pathway · Skill · 1,614 stars

  Metabolomics pathway analysis — metabolite identification (HMDB, KEGG, ChEBI), pathway mapping (Reactome, KEGG, MetaCyc), disease associations, enzyme/gene

• tooluniverse-metabolomics-pathway · Skill · 1,614 stars

  Metabolomics pathway analysis — metabolite identification (HMDB, KEGG, ChEBI), pathway mapping (Reactome, KEGG, MetaCyc), disease associations, enzyme/gene

• tooluniverse-metagenomics-analysis · Skill · 1,614 stars

  Microbiome and metagenomics analysis using MGnify, GTDB taxonomy, ENA sequencing data, and EuropePMC literature. Covers taxonomic classification, genome qu

• tooluniverse-metagenomics-analysis · Skill · 1,614 stars

  Microbiome and metagenomics analysis using MGnify, GTDB taxonomy, ENA sequencing data, and EuropePMC literature. Covers taxonomic classification, genome qu

• tooluniverse-metagenomics-analysis · Skill · 1,614 stars

  Microbiome and metagenomics analysis using MGnify, GTDB taxonomy, ENA sequencing data, and EuropePMC literature. Covers taxonomic classification, genome qu

• tooluniverse-microbial-genome-characterization · Skill · 1,614 stars

  Genome-ASSEMBLY discovery, QC, and replicon mapping for any organism (bacteria, archaea, fungi, and beyond) using NCBI Datasets. Resolves an organism name

• tooluniverse-microbial-genome-characterization · Skill · 1,614 stars

  Genome-ASSEMBLY discovery, QC, and replicon mapping for any organism (bacteria, archaea, fungi, and beyond) using NCBI Datasets. Resolves an organism name

• tooluniverse-microbial-genome-characterization · Skill · 1,614 stars

  Genome-ASSEMBLY discovery, QC, and replicon mapping for any organism (bacteria, archaea, fungi, and beyond) using NCBI Datasets. Resolves an organism name

• tooluniverse-microbiome-research · Skill · 1,614 stars

  Microbiome research using MGnify, GTDB, ENA, OLS (ENVO biomes), and EuropePMC. Covers study discovery, taxonomic profiling, host-microbe interaction analys

• tooluniverse-microbiome-research · Skill · 1,614 stars

  Microbiome research using MGnify, GTDB, ENA, OLS (ENVO biomes), and EuropePMC. Covers study discovery, taxonomic profiling, host-microbe interaction analys

• tooluniverse-microbiome-research · Skill · 1,614 stars

  Microbiome research using MGnify, GTDB, ENA, OLS (ENVO biomes), and EuropePMC. Covers study discovery, taxonomic profiling, host-microbe interaction analys

• tooluniverse-model-organism-genetics · Skill · 1,614 stars

  Cross-species genetic analysis using model organism databases (MGI mouse, ZFIN zebrafish, FlyBase fruit fly, WormBase worm, SGD yeast, RGD rat, GBIF taxono

• tooluniverse-model-organism-genetics · Skill · 1,614 stars

  Cross-species genetic analysis using model organism databases (MGI mouse, ZFIN zebrafish, FlyBase fruit fly, WormBase worm, SGD yeast, RGD rat, GBIF taxono

• tooluniverse-model-organism-genetics · Skill · 1,614 stars

  Cross-species genetic analysis using model organism databases (MGI mouse, ZFIN zebrafish, FlyBase fruit fly, WormBase worm, SGD yeast, RGD rat, GBIF taxono

• tooluniverse-molecular-cloning · Skill · 1,614 stars

  Molecular cloning, in both directions. DESIGN — Gibson Assembly (overlap design for seamless multi-fragment joining) and Golden Gate Assembly (Type IIS / B

• tooluniverse-molecular-cloning · Skill · 1,614 stars

  Molecular cloning assembly design — Gibson Assembly (overlap design for seamless multi-fragment joining) and Golden Gate Assembly (Type IIS / BsaI / BbsI d

• tooluniverse-molecular-cloning · Skill · 1,614 stars

  Molecular cloning assembly design — Gibson Assembly (overlap design for seamless multi-fragment joining) and Golden Gate Assembly (Type IIS / BsaI / BbsI d

• tooluniverse-multi-omics-integration · Skill · 1,614 stars

  Multi-omics integration — orchestrate per-layer analysis (transcriptomics, proteomics, epigenomics, genomics, metabolomics) then perform cross-omics correl

• tooluniverse-multi-omics-integration · Skill · 1,614 stars

  Multi-omics integration — orchestrate per-layer analysis (transcriptomics, proteomics, epigenomics, genomics, metabolomics) then perform cross-omics correl

• tooluniverse-multi-omics-integration · Skill · 1,614 stars

  Multi-omics integration — orchestrate per-layer analysis (transcriptomics, proteomics, epigenomics, genomics, metabolomics) then perform cross-omics correl

• tooluniverse-multiomic-disease-characterization · Skill · 1,614 stars

  Comprehensive disease characterization across genomics, transcriptomics, proteomics, and pathways for systems-level understanding. Identifies therapeutic o

• tooluniverse-multiomic-disease-characterization · Skill · 1,614 stars

  Comprehensive disease characterization across genomics, transcriptomics, proteomics, and pathways for systems-level understanding. Identifies therapeutic o

• tooluniverse-multiomic-disease-characterization · Skill · 1,614 stars

  Comprehensive disease characterization across genomics, transcriptomics, proteomics, and pathways for systems-level understanding. Identifies therapeutic o

• tooluniverse-natural-product-dereplication · Skill · 1,614 stars

  Dereplicate a putative natural product and assign its chemical taxonomy. Use to answer "is [compound] a known natural product", "what microbe/organism prod

• tooluniverse-natural-product-dereplication · Skill · 1,614 stars

  Dereplicate a putative natural product and assign its chemical taxonomy. Use to answer "is [compound] a known natural product", "what microbe/organism prod

• tooluniverse-natural-product-dereplication · Skill · 1,614 stars

  Dereplicate a putative natural product and assign its chemical taxonomy. Use to answer \"is [compound] a known natural product\", \"what microbe/organism p

• tooluniverse-network-pharmacology · Skill · 1,614 stars

  Compound-target-disease network construction and analysis for drug repurposing, polypharmacology discovery, and multi-target drug design. Uses STRING, BioG

• tooluniverse-network-pharmacology · Skill · 1,614 stars

  Compound-target-disease network construction and analysis for drug repurposing, polypharmacology discovery, and multi-target drug design. Uses STRING, BioG

• tooluniverse-network-pharmacology · Skill · 1,614 stars

  Compound-target-disease network construction and analysis for drug repurposing, polypharmacology discovery, and multi-target drug design. Uses STRING, BioG

• tooluniverse-neuroscience · Skill · 1,614 stars

  Neuroscience research workflows: neuroanatomy, neural circuits, neurotransmitter biology, neurological/psychiatric disease genetics, neural-protein functio

• tooluniverse-neuroscience · Skill · 1,614 stars

  Neuroscience research workflows: neuroanatomy, neural circuits, neurotransmitter biology, neurological/psychiatric disease genetics, neural-protein functio

• tooluniverse-neuroscience · Skill · 1,614 stars

  Neuroscience research workflows: neuroanatomy, neural circuits, neurotransmitter biology, neurological/psychiatric disease genetics, neural-protein functio

• tooluniverse-noncoding-rna · Skill · 1,614 stars

  Non-coding RNA analysis — miRNAs (miRBase, miRDB targets), lncRNAs (LNCipedia, RNAcentral), circRNAs, snoRNAs, and other ncRNA classes. Distinct mechanisms

• tooluniverse-noncoding-rna · Skill · 1,614 stars

  Non-coding RNA analysis — miRNAs (miRBase, miRDB targets), lncRNAs (LNCipedia, RNAcentral), circRNAs, snoRNAs, and other ncRNA classes. Distinct mechanisms

• tooluniverse-noncoding-rna · Skill · 1,614 stars

  Non-coding RNA analysis — miRNAs (miRBase, miRDB targets), lncRNAs (LNCipedia, RNAcentral), circRNAs, snoRNAs, and other ncRNA classes. Distinct mechanisms

• tooluniverse-organic-chemistry · Skill · 1,614 stars

  Organic chemistry reasoning guide for reaction product prediction, mechanism analysis (electrophilic/nucleophilic substitution, addition, elimination, peri

• tooluniverse-organic-chemistry · Skill · 1,614 stars

  Organic chemistry reasoning guide for reaction product prediction, mechanism analysis (electrophilic/nucleophilic substitution, addition, elimination, peri

• tooluniverse-organic-chemistry · Skill · 1,614 stars

  Organic chemistry reasoning guide for reaction product prediction, mechanism analysis (electrophilic/nucleophilic substitution, addition, elimination, peri

• tooluniverse-pathway-disease-genetics · Skill · 1,614 stars

  Connect GWAS variants to biological pathways and druggable targets. Maps GWAS hits to causal genes (via fine-mapping/eQTL), then to pathways (Reactome, KEG

• tooluniverse-pathway-disease-genetics · Skill · 1,614 stars

  Connect GWAS variants to biological pathways and druggable targets. Maps GWAS hits to causal genes (via fine-mapping/eQTL), then to pathways (Reactome, KEG

• tooluniverse-pathway-disease-genetics · Skill · 1,614 stars

  Connect GWAS variants to biological pathways and druggable targets. Maps GWAS hits to causal genes (via fine-mapping/eQTL), then to pathways (Reactome, KEG

• tooluniverse-peptide-target-deorphanization · Skill · 1,614 stars

  Find the real protein target(s) of a peptide from its sequence — peptide target deorphanization / off-target identification, for ANY target class (GPCR, io

• tooluniverse-peptide-target-deorphanization · Skill · 1,614 stars

  Find the real protein target(s) of a peptide from its sequence — peptide target deorphanization / off-target identification, for ANY target class (GPCR, io

• tooluniverse-peptide-target-deorphanization · Skill · 1,614 stars

  Find the real protein target(s) of a peptide from its sequence — peptide target deorphanization / off-target identification, for ANY target class (GPCR, io

• tooluniverse-pharmacogenomics · Skill · 1,614 stars

  Pharmacogenomics (PGx) research — drug-gene interactions (CPIC, PharmGKB), CPIC dosing guidelines, variant-drug-response associations, ethnic-allele-freque

• tooluniverse-pharmacogenomics · Skill · 1,614 stars

  Pharmacogenomics (PGx) research — drug-gene interactions (CPIC, PharmGKB), CPIC dosing guidelines, variant-drug-response associations, ethnic-allele-freque

• tooluniverse-pharmacogenomics · Skill · 1,614 stars

  Pharmacogenomics (PGx) research — drug-gene interactions (CPIC, PharmGKB), CPIC dosing guidelines, variant-drug-response associations, ethnic-allele-freque

• tooluniverse-pharmacokinetics · Skill · 1,614 stars

  Pharmacokinetic (PK) analysis of concentration-time data — non-compartmental analysis (NCA) for Cmax, Tmax, AUC (0-t and 0-∞), terminal half-life, clearanc

• tooluniverse-pharmacokinetics · Skill · 1,614 stars

  Pharmacokinetic (PK) analysis of concentration-time data — non-compartmental analysis (NCA) for Cmax, Tmax, AUC (0-t and 0-∞), terminal half-life, clearanc

• tooluniverse-pharmacokinetics · Skill · 1,614 stars

  Pharmacokinetic (PK) analysis of concentration-time data — non-compartmental analysis (NCA) for Cmax, Tmax, AUC (0-t and 0-∞), terminal half-life, clearanc

• tooluniverse-pharmacovigilance · Skill · 1,614 stars

  Drug safety and adverse event analysis — FAERS spontaneous-report mining, FDA black-box warnings, signal detection (PRR, ROR, IC), risk factors by demograp

• tooluniverse-pharmacovigilance · Skill · 1,614 stars

  Drug safety and adverse event analysis — FAERS spontaneous-report mining, FDA black-box warnings, signal detection (PRR, ROR, IC), risk factors by demograp

• tooluniverse-pharmacovigilance · Skill · 1,614 stars

  Drug safety and adverse event analysis — FAERS spontaneous-report mining, FDA black-box warnings, signal detection (PRR, ROR, IC), risk factors by demograp

• tooluniverse-phewas · Skill · 1,614 stars

  Cross-ancestry / cross-biobank phenome-wide association (PheWAS) and replication. Given ONE variant (rsID) or ONE gene, look up every phenotype it associat

• tooluniverse-phewas · Skill · 1,614 stars

  Cross-ancestry / cross-biobank phenome-wide association (PheWAS) and replication. Given ONE variant (rsID) or ONE gene, look up every phenotype it associat

• tooluniverse-phewas · Skill · 1,614 stars

  Cross-ancestry / cross-biobank phenome-wide association (PheWAS) and replication. Given ONE variant (rsID) or ONE gene, look up every phenotype it associat

• tooluniverse-phylogenetics · Skill · 1,614 stars

  Phylogenetic analysis — de novo multiple sequence alignment (Clustal Omega/MUSCLE/MAFFT via EBI_msa_align) and neighbour-joining/UPGMA tree building (EBI_b

• tooluniverse-phylogenetics · Skill · 1,614 stars

  Phylogenetic analysis — de novo multiple sequence alignment (Clustal Omega/MUSCLE/MAFFT via EBI_msa_align) and neighbour-joining/UPGMA tree building (EBI_b

• tooluniverse-phylogenetics · Skill · 1,614 stars

  Phylogenetic analysis — de novo multiple sequence alignment (Clustal Omega/MUSCLE/MAFFT via EBI_msa_align) and neighbour-joining/UPGMA tree building (EBI_b

• tooluniverse-plant-genomics · Skill · 1,614 stars

  Plant genomics and biology research — PlantReactome pathways, Ensembl Plants gene structure, POWO species taxonomy, UniProt annotation, KEGG plant pathways

• tooluniverse-plant-genomics · Skill · 1,614 stars

  Plant genomics and biology research — PlantReactome pathways, Ensembl Plants gene structure, POWO species taxonomy, UniProt annotation, KEGG plant pathways

• tooluniverse-plant-genomics · Skill · 1,614 stars

  Plant genomics and biology research — PlantReactome pathways, Ensembl Plants gene structure, POWO species taxonomy, UniProt annotation, KEGG plant pathways

• tooluniverse-polygenic-risk-score · Skill · 1,614 stars

  Build and interpret polygenic risk scores (PRS) for complex diseases using GWAS summary statistics. Covers PRS construction (clumping/thresholding, PRS-CS)

• tooluniverse-polygenic-risk-score · Skill · 1,614 stars

  Build and interpret polygenic risk scores (PRS) for complex diseases using GWAS summary statistics. Covers PRS construction (clumping/thresholding, PRS-CS)

• tooluniverse-polygenic-risk-score · Skill · 1,614 stars

  Build and interpret polygenic risk scores (PRS) for complex diseases using GWAS summary statistics. Covers PRS construction (clumping/thresholding, PRS-CS)

• tooluniverse-population-genetics · Skill · 1,614 stars

  Population genetics analysis — allele frequencies (gnomAD, 1000 Genomes), Hardy-Weinberg equilibrium testing, Fst between populations, GWAS associations, e

• tooluniverse-population-genetics · Skill · 1,614 stars

  Population genetics analysis — allele frequencies (gnomAD, 1000 Genomes), Hardy-Weinberg equilibrium testing, Fst between populations, GWAS associations, e

• tooluniverse-population-genetics · Skill · 1,614 stars

  Population genetics analysis — allele frequencies (gnomAD, 1000 Genomes), Hardy-Weinberg equilibrium testing, Fst between populations, GWAS associations, e

• tooluniverse-population-genetics-1000genomes · Skill · 1,614 stars

  Population genetics using the 1000 Genomes Project (IGSR) — superpopulation/population search, sample metadata, variant frequencies across AFR/AMR/EAS/EUR/

• tooluniverse-population-genetics-1000genomes · Skill · 1,614 stars

  Population genetics using the 1000 Genomes Project (IGSR) — superpopulation/population search, sample metadata, variant frequencies across AFR/AMR/EAS/EUR/

• tooluniverse-population-genetics-1000genomes · Skill · 1,614 stars

  Population genetics using the 1000 Genomes Project (IGSR) — superpopulation/population search, sample metadata, variant frequencies across AFR/AMR/EAS/EUR/

• tooluniverse-precision-medicine-stratification · Skill · 1,614 stars

  Patient stratification for precision medicine — integrate genomic, clinical, and therapeutic data to split patients into responder/non-responder groups, ri

• tooluniverse-precision-medicine-stratification · Skill · 1,614 stars

  Patient stratification for precision medicine — integrate genomic, clinical, and therapeutic data to split patients into responder/non-responder groups, ri

• tooluniverse-precision-medicine-stratification · Skill · 1,614 stars

  Patient stratification for precision medicine — integrate genomic, clinical, and therapeutic data to split patients into responder/non-responder groups, ri

• tooluniverse-precision-oncology · Skill · 1,614 stars

  Cancer treatment recommendations from molecular profile (mutations + cancer type + biomarkers) — FDA-approved + investigational therapies, resistance mecha

• tooluniverse-precision-oncology · Skill · 1,614 stars

  Cancer treatment recommendations from molecular profile (mutations + cancer type + biomarkers) — FDA-approved + investigational therapies, resistance mecha

• tooluniverse-precision-oncology · Skill · 1,614 stars

  Cancer treatment recommendations from molecular profile (mutations + cancer type + biomarkers) — FDA-approved + investigational therapies, resistance mecha

• tooluniverse-primer-design · Skill · 1,614 stars

  PCR / qPCR primer and oligo design — design forward/reverse primers for a target region (SantaLucia nearest-neighbor thermodynamics), compute melting tempe

• tooluniverse-primer-design · Skill · 1,614 stars

  PCR / qPCR primer and oligo design — design forward/reverse primers for a target region (SantaLucia nearest-neighbor thermodynamics), compute melting tempe

• tooluniverse-primer-design · Skill · 1,614 stars

  PCR / qPCR primer and oligo design — design forward/reverse primers for a target region (SantaLucia nearest-neighbor thermodynamics), compute melting tempe

• tooluniverse-product-safety-surveillance · Skill · 1,614 stars

  Post-market safety surveillance and recall/adverse-event RETRIEVAL across the full spectrum of FDA-regulated products that are NOT covered by the drug-AE s

• tooluniverse-product-safety-surveillance · Skill · 1,614 stars

  Post-market safety surveillance and recall/adverse-event RETRIEVAL across the full spectrum of FDA-regulated products that are NOT covered by the drug-AE s

• tooluniverse-product-safety-surveillance · Skill · 1,614 stars

  Post-market safety surveillance and recall/adverse-event RETRIEVAL across the full spectrum of FDA-regulated products that are NOT covered by the drug-AE s

• tooluniverse-protein-interactions · Skill · 1,614 stars

  Protein-protein interaction (PPI) network analysis — STRING (predicted + experimental), BioGRID (curated), SASBDB (small-angle scattering). Distinguishes p

• tooluniverse-protein-interactions · Skill · 1,614 stars

  Protein-protein interaction (PPI) network analysis — STRING (predicted + experimental), BioGRID (curated), SASBDB (small-angle scattering). Distinguishes p

• tooluniverse-protein-interactions · Skill · 1,614 stars

  Protein-protein interaction (PPI) network analysis — STRING (predicted + experimental), BioGRID (curated), SASBDB (small-angle scattering). Distinguishes p

• tooluniverse-protein-lof-mechanism · Skill · 1,614 stars

  Propose the mechanism by which a missense variant causes loss-of-function (LoF), synthesizing evidence from 5 independent layers: AlphaMissense pathogenici

• tooluniverse-protein-lof-mechanism · Skill · 1,614 stars

  Propose the mechanism by which a missense variant causes loss-of-function (LoF), synthesizing evidence from 5 independent layers: AlphaMissense pathogenici

• tooluniverse-protein-lof-mechanism · Skill · 1,614 stars

  Propose the mechanism by which a missense variant causes loss-of-function (LoF), synthesizing evidence from 5 independent layers: AlphaMissense pathogenici

• tooluniverse-protein-modification-analysis · Skill · 1,614 stars

  Post-translational modification (PTM) analysis — phosphorylation, ubiquitination, acetylation, glycosylation, methylation. Uses iPTMnet (sites + enzymes),

• tooluniverse-protein-modification-analysis · Skill · 1,614 stars

  Post-translational modification (PTM) analysis — phosphorylation, ubiquitination, acetylation, glycosylation, methylation. Uses iPTMnet (sites + enzymes),

• tooluniverse-protein-modification-analysis · Skill · 1,614 stars

  Post-translational modification (PTM) analysis — phosphorylation, ubiquitination, acetylation, glycosylation, methylation. Uses iPTMnet (sites + enzymes),

• tooluniverse-protein-sae-variant-interpretation · Skill · 1,614 stars

  Interpret a missense variant via ESMC-6B Sparse Autoencoder (SAE) feature activations. For a given protein + variant, computes which interpretable SAE feat

• tooluniverse-protein-sae-variant-interpretation · Skill · 1,614 stars

  Interpret a missense variant via ESMC-6B Sparse Autoencoder (SAE) feature activations. For a given protein + variant, computes which interpretable SAE feat

• tooluniverse-protein-sae-variant-interpretation · Skill · 1,614 stars

  Interpret a missense variant via ESMC-6B Sparse Autoencoder (SAE) feature activations. For a given protein + variant, computes which interpretable SAE feat

• tooluniverse-protein-structural-annotation-pdb · Skill · 1,614 stars

  Given a PDB structure, produce a per-residue annotation table: which residues sit at a binding interface (vs a partner chain), which line a ligand pocket,

• tooluniverse-protein-structural-annotation-pdb · Skill · 1,614 stars

  Given a PDB structure, produce a per-residue annotation table: which residues sit at a binding interface (vs a partner chain), which line a ligand pocket,

• tooluniverse-protein-structural-annotation-pdb · Skill · 1,614 stars

  Given a PDB structure, produce a per-residue annotation table: which residues sit at a binding interface (vs a partner chain), which line a ligand pocket,

• tooluniverse-protein-structure-prediction · Skill · 1,614 stars

  Protein 3D structure prediction from sequence — ESMFold de novo prediction, AlphaFold database retrieval, experimental structures from RCSB, ProtVar varian

• tooluniverse-protein-structure-prediction · Skill · 1,614 stars

  Protein 3D structure prediction from sequence — ESMFold de novo prediction, AlphaFold database retrieval, experimental structures from RCSB, ProtVar varian

• tooluniverse-protein-structure-prediction · Skill · 1,614 stars

  Protein 3D structure prediction from sequence — ESMFold de novo prediction, AlphaFold database retrieval, experimental structures from RCSB, ProtVar varian

• tooluniverse-protein-structure-retrieval · Skill · 1,614 stars

  Protein structure retrieval from RCSB PDB, PDBe, and AlphaFold with disambiguation, quality assessment (resolution, R-factor, pLDDT), and metadata. Disting

• tooluniverse-protein-structure-retrieval · Skill · 1,614 stars

  Protein structure retrieval from RCSB PDB, PDBe, and AlphaFold with disambiguation, quality assessment (resolution, R-factor, pLDDT), and metadata. Disting

• tooluniverse-protein-structure-retrieval · Skill · 1,614 stars

  Protein structure retrieval from RCSB PDB, PDBe, and AlphaFold with disambiguation, quality assessment (resolution, R-factor, pLDDT), and metadata. Disting

• tooluniverse-protein-therapeutic-design · Skill · 1,614 stars

  AI-guided de novo protein design — RFdiffusion backbone generation, ProteinMPNN sequence design, structure validation (pLDDT, pTM, MPNN scores). Use for de

• tooluniverse-protein-therapeutic-design · Skill · 1,614 stars

  AI-guided de novo protein design — RFdiffusion backbone generation, ProteinMPNN sequence design, structure validation (pLDDT, pTM, MPNN scores). Use for de

• tooluniverse-protein-therapeutic-design · Skill · 1,614 stars

  AI-guided de novo protein design — RFdiffusion backbone generation, ProteinMPNN sequence design, structure validation (pLDDT, pTM, MPNN scores). Use for de

• tooluniverse-proteomics-analysis · Skill · 1,614 stars

  Mass-spec proteomics analysis — protein identification, quantification (LFQ, TMT, iTRAQ), differential expression (tumor vs normal, treatment vs control),

• tooluniverse-proteomics-analysis · Skill · 1,614 stars

  Mass-spec proteomics analysis — protein identification, quantification (LFQ, TMT, iTRAQ), differential expression (tumor vs normal, treatment vs control),

• tooluniverse-proteomics-analysis · Skill · 1,614 stars

  Mass-spec proteomics analysis — protein identification, quantification (LFQ, TMT, iTRAQ), differential expression (tumor vs normal, treatment vs control),

• tooluniverse-proteomics-data-retrieval · Skill · 1,614 stars

  Find and retrieve proteomics datasets from MassIVE and ProteomeXchange. Search by species, keyword, or accession; retrieve detailed metadata (instruments,

• tooluniverse-proteomics-data-retrieval · Skill · 1,614 stars

  Find and retrieve proteomics datasets from MassIVE and ProteomeXchange. Search by species, keyword, or accession; retrieve detailed metadata (instruments,

• tooluniverse-proteomics-data-retrieval · Skill · 1,614 stars

  Find and retrieve proteomics datasets from MassIVE and ProteomeXchange. Search by species, keyword, or accession; retrieve detailed metadata (instruments,

• tooluniverse-rare-disease-diagnosis · Skill · 1,614 stars

  Rare disease differential diagnosis from patient phenotype — HPO term matching to candidate diseases (Orphanet, OMIM), gene panel prioritization, ACMG vari

• tooluniverse-rare-disease-diagnosis · Skill · 1,614 stars

  Rare disease differential diagnosis from patient phenotype — HPO term matching to candidate diseases (Orphanet, OMIM), gene panel prioritization, ACMG vari

• tooluniverse-rare-disease-diagnosis · Skill · 1,614 stars

  Rare disease differential diagnosis from patient phenotype — HPO term matching to candidate diseases (Orphanet, OMIM), gene panel prioritization, ACMG vari

• tooluniverse-rare-disease-genomics · Skill · 1,614 stars

  Rare disease genomics — disease identification (Orphanet), causative gene discovery, gene-disease validity (GenCC), variant interpretation (ClinVar), and t

• tooluniverse-rare-disease-genomics · Skill · 1,614 stars

  Rare disease genomics — disease identification (Orphanet), causative gene discovery, gene-disease validity (GenCC), variant interpretation (ClinVar), and t

• tooluniverse-rare-disease-genomics · Skill · 1,614 stars

  Rare disease genomics — disease identification (Orphanet), causative gene discovery, gene-disease validity (GenCC), variant interpretation (ClinVar), and t

• tooluniverse-regulatory-genomics · Skill · 1,614 stars

  Transcription factor binding, cis-regulatory elements (cCREs), chromatin accessibility, and regulatory annotation using JASPAR (motifs), ENCODE (cCREs, ChI

• tooluniverse-regulatory-genomics · Skill · 1,614 stars

  Transcription factor binding, cis-regulatory elements (cCREs), chromatin accessibility, and regulatory annotation using JASPAR (motifs), ENCODE (cCREs, ChI

• tooluniverse-regulatory-genomics · Skill · 1,614 stars

  Transcription factor binding, cis-regulatory elements (cCREs), chromatin accessibility, and regulatory annotation using JASPAR (motifs), ENCODE (cCREs, ChI

• tooluniverse-regulatory-variant-analysis · Skill · 1,614 stars

  Non-coding/regulatory variant interpretation — GWAS association lookup, eQTL evidence (GTEx), chromatin state (ENCODE), regulatory variant scoring (Regulom

• tooluniverse-regulatory-variant-analysis · Skill · 1,614 stars

  Non-coding/regulatory variant interpretation — GWAS association lookup, eQTL evidence (GTEx), chromatin state (ENCODE), regulatory variant scoring (Regulom

• tooluniverse-regulatory-variant-analysis · Skill · 1,614 stars

  Non-coding/regulatory variant interpretation — GWAS association lookup, eQTL evidence (GTEx), chromatin state (ENCODE), regulatory variant scoring (Regulom

• tooluniverse-residue-functional-mechanism-interpretation · Skill · 1,614 stars

  Given a set of residues in a protein, explain WHY they are functionally critical by combining structural context (binding interface, ligand pocket, core, s

• tooluniverse-residue-functional-mechanism-interpretation · Skill · 1,614 stars

  Given a set of residues in a protein, explain WHY they are functionally critical by combining structural context (binding interface, ligand pocket, core, s

• tooluniverse-residue-functional-mechanism-interpretation · Skill · 1,614 stars

  Given a set of residues in a protein, explain WHY they are functionally critical by combining structural context (binding interface, ligand pocket, core, s

• tooluniverse-rnaseq-deseq2 · Skill · 1,614 stars

  RNA-seq differential expression analysis with DESeq2, edgeR, and limma-voom — DEG lists, fold changes, dispersion estimation, design formulas including cov

• tooluniverse-rnaseq-deseq2 · Skill · 1,614 stars

  RNA-seq differential expression analysis with DESeq2, edgeR, and limma-voom — DEG lists, fold changes, dispersion estimation, design formulas including cov

• tooluniverse-rnaseq-deseq2 · Skill · 1,614 stars

  RNA-seq differential expression analysis with DESeq2, edgeR, and limma-voom — DEG lists, fold changes, dispersion estimation, design formulas including cov

• tooluniverse-sdk · Skill · 1,614 stars

  Build AI scientist systems with the ToolUniverse Python SDK for scientific research. Covers the 3 calling patterns (`tu.run` portable dict API, `tu.tools.X

• tooluniverse-sdk · Skill · 1,614 stars

  Build AI scientist systems with the ToolUniverse Python SDK for scientific research. Covers the 3 calling patterns (`tu.run` portable dict API, `tu.tools.X

• tooluniverse-sdk · Skill · 1,614 stars

  Build AI scientist systems with the ToolUniverse Python SDK for scientific research. Covers the 3 calling patterns (`tu.run` portable dict API, `tu.tools.X

• tooluniverse-self-review · Skill · 1,614 stars

  Review existing work against the user's actual goal and surface evidence-backed strengths, gaps, risks, and next fixes. Use when asked to eval, evaluate, r

• tooluniverse-self-review · Skill · 1,614 stars

  Review existing work against the user's actual goal and surface evidence-backed strengths, gaps, risks, and next fixes. Use when asked to eval, evaluate, r

• tooluniverse-self-review · Skill · 1,614 stars

  Review existing work against the user's actual goal and surface evidence-backed strengths, gaps, risks, and next fixes. Use when asked to eval, evaluate, r

• tooluniverse-sequence-analysis · Skill · 1,614 stars

  Biological sequence analysis — gene/protein sequence retrieval (NCBI, Ensembl, UniProt), nucleotide/protein search, ortholog discovery, and FASTQ QC + alig

• tooluniverse-sequence-analysis · Skill · 1,614 stars

  Biological sequence analysis — gene/protein sequence retrieval (NCBI, Ensembl, UniProt), nucleotide/protein search, ortholog discovery, and FASTQ QC + alig

• tooluniverse-sequence-analysis · Skill · 1,614 stars

  Biological sequence analysis — gene/protein sequence retrieval (NCBI, Ensembl, UniProt), nucleotide/protein search, ortholog discovery, and FASTQ QC + alig

• tooluniverse-sequence-retrieval · Skill · 1,614 stars

  Retrieve DNA/RNA/protein sequences from NCBI and ENA with disambiguation. Quality hierarchy: RefSeq (NM_/NP_) > RefSeq predicted (XM_/XP_) > GenBank submis

• tooluniverse-sequence-retrieval · Skill · 1,614 stars

  Retrieve DNA/RNA/protein sequences from NCBI and ENA with disambiguation. Quality hierarchy: RefSeq (NM_/NP_) > RefSeq predicted (XM_/XP_) > GenBank submis

• tooluniverse-sequence-retrieval · Skill · 1,614 stars

  Retrieve DNA/RNA/protein sequences from NCBI and ENA with disambiguation. Quality hierarchy: RefSeq (NM_/NP_) > RefSeq predicted (XM_/XP_) > GenBank submis

• tooluniverse-single-cell · Skill · 1,614 stars

  Single-cell RNA-seq analysis with scanpy/anndata — h5ad data loading, scRNA-seq quality control and QC gating (n_genes_by_counts, total_counts, mitochondri

• tooluniverse-single-cell · Skill · 1,614 stars

  Single-cell RNA-seq analysis with scanpy/anndata — h5ad data loading, scRNA-seq quality control and QC gating (n_genes_by_counts, total_counts, mitochondri

• tooluniverse-single-cell · Skill · 1,614 stars

  Single-cell RNA-seq analysis with scanpy/anndata — h5ad data loading, scRNA-seq quality control and QC gating (n_genes_by_counts, total_counts, mitochondri

• tooluniverse-small-molecule-discovery · Skill · 1,614 stars

  Small molecule identification, characterization, and procurement — PubChem, ChEMBL, BindingDB, ADMET-AI, SwissADME, eMolecules, Enamine. Covers compound na

• tooluniverse-small-molecule-discovery · Skill · 1,614 stars

  Small molecule identification, characterization, and procurement — PubChem, ChEMBL, BindingDB, ADMET-AI, SwissADME, eMolecules, Enamine. Covers compound na

• tooluniverse-small-molecule-discovery · Skill · 1,614 stars

  Small molecule identification, characterization, and procurement — PubChem, ChEMBL, BindingDB, ADMET-AI, SwissADME, eMolecules, Enamine. Covers compound na

• tooluniverse-spatial-omics-analysis · Skill · 1,614 stars

  Spatial multi-omics interpretation pipeline. Transforms spatially variable genes (SVGs), domain annotations, and tissue context into biological insights vi

• tooluniverse-spatial-omics-analysis · Skill · 1,614 stars

  Spatial multi-omics interpretation pipeline. Transforms spatially variable genes (SVGs), domain annotations, and tissue context into biological insights vi

• tooluniverse-spatial-omics-analysis · Skill · 1,614 stars

  Spatial multi-omics interpretation pipeline. Transforms spatially variable genes (SVGs), domain annotations, and tissue context into biological insights vi

• tooluniverse-spatial-transcriptomics · Skill · 1,614 stars

  Spatial transcriptomics analysis — Visium, MERFISH, seqFISH, Slide-seq. Maps gene expression to tissue architecture, identifies spatially variable genes (S

• tooluniverse-spatial-transcriptomics · Skill · 1,614 stars

  Spatial transcriptomics analysis — Visium, MERFISH, seqFISH, Slide-seq. Maps gene expression to tissue architecture, identifies spatially variable genes (S

• tooluniverse-spatial-transcriptomics · Skill · 1,614 stars

  Spatial transcriptomics analysis — Visium, MERFISH, seqFISH, Slide-seq. Maps gene expression to tissue architecture, identifies spatially variable genes (S

• tooluniverse-statistical-modeling · Skill · 1,614 stars

  Statistical modeling — linear/logistic/ordinal/Poisson regression, ANOVA, Kruskal-Wallis, chi-square, Mann-Whitney, Cox survival, spline fits (R `ns()`), o

• tooluniverse-statistical-modeling · Skill · 1,614 stars

  Statistical modeling — linear/logistic/ordinal/Poisson regression, ANOVA, Kruskal-Wallis, chi-square, Mann-Whitney, Cox survival, spline fits (R `ns()`), o

• tooluniverse-statistical-modeling · Skill · 1,614 stars

  Statistical modeling — linear/logistic/ordinal/Poisson regression, ANOVA, Kruskal-Wallis, chi-square, Mann-Whitney, Cox survival, spline fits (R `ns()`), o

• tooluniverse-stem-cell-organoid · Skill · 1,614 stars

  Stem cell, iPSC, and organoid research — pluripotency markers, differentiation protocol pathways, lineage commitment factors, organoid model selection. Use

• tooluniverse-stem-cell-organoid · Skill · 1,614 stars

  Stem cell, iPSC, and organoid research — pluripotency markers, differentiation protocol pathways, lineage commitment factors, organoid model selection. Use

• tooluniverse-stem-cell-organoid · Skill · 1,614 stars

  Stem cell, iPSC, and organoid research — pluripotency markers, differentiation protocol pathways, lineage commitment factors, organoid model selection. Use

• tooluniverse-structural-proteomics · Skill · 1,614 stars

  Structural biology plus proteomics integration for drug target validation. Combines PDB experimental structures, AlphaFold predictions, GPCRdb, SAbDab anti

• tooluniverse-structural-proteomics · Skill · 1,614 stars

  Structural biology plus proteomics integration for drug target validation. Combines PDB experimental structures, AlphaFold predictions, GPCRdb, SAbDab anti

• tooluniverse-structural-proteomics · Skill · 1,614 stars

  Structural biology plus proteomics integration for drug target validation. Combines PDB experimental structures, AlphaFold predictions, GPCRdb, SAbDab anti

• tooluniverse-structural-variant-analysis · Skill · 1,614 stars

  Structural variant (SV) clinical interpretation: deletions, duplications, inversions, translocations, complex rearrangements. Applies ACMG-adapted criteria

• tooluniverse-structural-variant-analysis · Skill · 1,614 stars

  Structural variant (SV) clinical interpretation: deletions, duplications, inversions, translocations, complex rearrangements. Applies ACMG-adapted criteria

• tooluniverse-structural-variant-analysis · Skill · 1,614 stars

  Structural variant (SV) clinical interpretation: deletions, duplications, inversions, translocations, complex rearrangements. Applies ACMG-adapted criteria

• tooluniverse-systems-biology · Skill · 1,614 stars

  Systems biology and pathway analysis integrating Reactome, KEGG, WikiPathways, BioCarta, NCI-Nature Pathway Interaction Database. Multi-database pathway en

• tooluniverse-systems-biology · Skill · 1,614 stars

  Systems biology and pathway analysis integrating Reactome, KEGG, WikiPathways, BioCarta, NCI-Nature Pathway Interaction Database. Multi-database pathway en

• tooluniverse-systems-biology · Skill · 1,614 stars

  Systems biology and pathway analysis integrating Reactome, KEGG, WikiPathways, BioCarta, NCI-Nature Pathway Interaction Database. Multi-database pathway en

• tooluniverse-target-research · Skill · 1,614 stars

  Comprehensive drug-target intelligence — tissue expression (GTEx, HPA), pathways, protein interactions (STRING), variant landscape (ClinVar, gnomAD), drugg

• tooluniverse-target-research · Skill · 1,614 stars

  Comprehensive drug-target intelligence — tissue expression (GTEx, HPA), pathways, protein interactions (STRING), variant landscape (ClinVar, gnomAD), drugg

• tooluniverse-target-research · Skill · 1,614 stars

  Comprehensive drug-target intelligence — tissue expression (GTEx, HPA), pathways, protein interactions (STRING), variant landscape (ClinVar, gnomAD), drugg

• tooluniverse-toxicology · Skill · 1,614 stars

  Drug and chemical toxicity assessment via adverse outcome pathways (AOPs), real-world FAERS adverse event signals, FDA labels, and toxicogenomic associatio

• tooluniverse-toxicology · Skill · 1,614 stars

  Drug and chemical toxicity assessment via adverse outcome pathways (AOPs), real-world FAERS adverse event signals, FDA labels, and toxicogenomic associatio

• tooluniverse-toxicology · Skill · 1,614 stars

  Drug and chemical toxicity assessment via adverse outcome pathways (AOPs), real-world FAERS adverse event signals, FDA labels, and toxicogenomic associatio

• tooluniverse-vaccine-design · Skill · 1,614 stars

  Computational vaccine candidate design: peptide/subunit vaccines via MHC-I/MHC-II epitope prediction (IEDB), population HLA coverage optimization, B-cell e

• tooluniverse-vaccine-design · Skill · 1,614 stars

  Computational vaccine candidate design: peptide/subunit vaccines via MHC-I/MHC-II epitope prediction (IEDB), population HLA coverage optimization, B-cell e

• tooluniverse-vaccine-design · Skill · 1,614 stars

  Computational vaccine candidate design: peptide/subunit vaccines via MHC-I/MHC-II epitope prediction (IEDB), population HLA coverage optimization, B-cell e

• tooluniverse-variant-analysis · Skill · 1,614 stars

  VCF and variant analysis — parsing, annotation, classification (synonymous, missense, frameshift, stop_gained), VAF filtering, coding vs non-coding categor

• tooluniverse-variant-analysis · Skill · 1,614 stars

  VCF and variant analysis — parsing, annotation, classification (synonymous, missense, frameshift, stop_gained), VAF filtering, coding vs non-coding categor

• tooluniverse-variant-analysis · Skill · 1,614 stars

  VCF and variant analysis — parsing, annotation, classification (synonymous, missense, frameshift, stop_gained), VAF filtering, coding vs non-coding categor

• tooluniverse-variant-functional-annotation · Skill · 1,614 stars

  Functional annotation of protein variants — ProtVar structural/functional context, ClinVar clinical classifications, gnomAD population frequencies, CADD de

• tooluniverse-variant-functional-annotation · Skill · 1,614 stars

  Functional annotation of protein variants — ProtVar structural/functional context, ClinVar clinical classifications, gnomAD population frequencies, CADD de

• tooluniverse-variant-functional-annotation · Skill · 1,614 stars

  Functional annotation of protein variants — ProtVar structural/functional context, ClinVar clinical classifications, gnomAD population frequencies, CADD de

• tooluniverse-variant-interpretation · Skill · 1,614 stars

  Clinical variant interpretation from raw variant calls to ACMG-classified recommendations with structural impact analysis. Use for VUS classification, path

• tooluniverse-variant-interpretation · Skill · 1,614 stars

  Clinical variant interpretation from raw variant calls to ACMG-classified recommendations with structural impact analysis. Use for VUS classification, path

• tooluniverse-variant-interpretation · Skill · 1,614 stars

  Clinical variant interpretation from raw variant calls to ACMG-classified recommendations with structural impact analysis. Use for VUS classification, path

• tooluniverse-variant-predictor-dms-validation · Skill · 1,614 stars

  Validate a variant-effect predictor (AlphaMissense, ESM-C SAE, ESM logits, EVE, conservation scores, or any per-variant numeric score) against experimental

• tooluniverse-variant-predictor-dms-validation · Skill · 1,614 stars

  Validate a variant-effect predictor (AlphaMissense, ESM-C SAE, ESM logits, EVE, conservation scores, or any per-variant numeric score) against experimental

• tooluniverse-variant-predictor-dms-validation · Skill · 1,614 stars

  Validate a variant-effect predictor (AlphaMissense, ESM-C SAE, ESM logits, EVE, conservation scores, or any per-variant numeric score) against experimental

• tooluniverse-variant-to-mechanism · Skill · 1,614 stars

  End-to-end variant-to-mechanism analysis — trace a variant (rsID/coordinates) through regulatory context, target gene(s), molecular pathway(s), and phenoty

• tooluniverse-variant-to-mechanism · Skill · 1,614 stars

  End-to-end variant-to-mechanism analysis — trace a variant (rsID/coordinates) through regulatory context, target gene(s), molecular pathway(s), and phenoty

• tooluniverse-variant-to-mechanism · Skill · 1,614 stars

  End-to-end variant-to-mechanism analysis — trace a variant (rsID/coordinates) through regulatory context, target gene(s), molecular pathway(s), and phenoty

• host-and-share-remote-tool · Skill

  Host, validate, and privately share a user's own model, Python function, workflow, or existing Streamable HTTP MCP endpoint through ToolUniverse Platform.

• setup-boltz-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the Boltz-2 ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying or

• setup-borzoi-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the Borzoi ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying or

• setup-cell2location-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the cell2location ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploy

• setup-cellrank-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the CellRank ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying o

• setup-celltypist-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the CellTypist ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying

• setup-chrombpnet-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the ChromBPNet ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying

• setup-depmap-24q2-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the DepMap 24Q2 ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deployin

• setup-enformer-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the Enformer ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying o

• setup-esm-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the ESM ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying or aud

• setup-expert-feedback-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the Human expert feedback ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use whe

• setup-harmony-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the Harmony ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying or

• setup-immune-compass-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the immune COMPASS ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deplo

• setup-ldsc-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the LDSC ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying or au

• setup-liana-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the LIANA ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying or a

• setup-macs3-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the MACS3 ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying or a

• setup-milo-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the Milo ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying or au

• setup-mofa-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the MOFA+ ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying or a

• setup-monocle3-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the Monocle 3 ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying

• setup-paga-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the PAGA ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying or au

• setup-pinnacle-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the PINNACLE ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying o

• setup-scanvi-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the scANVI ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying or

• setup-scrublet-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the Scrublet ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying o

• setup-scvelo-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the scVelo ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying or

• setup-scvi-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the scVI ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying or au

• setup-singler-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the SingleR ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying or

• setup-slingshot-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the Slingshot ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying

• setup-squidpy-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the Squidpy ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying or

• setup-tangram-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the Tangram ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying or

• setup-transcriptformer-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the TranscriptFormer ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when dep

• setup-uspto-downloader-remote-tool · Skill

  Set up, launch, validate, and troubleshoot the USPTO downloader ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when dep

• tooluniverse-nih-funding-landscape · Skill

  Analyze NIH grant portfolios and funding history using the OpenNIH FY1985-present corpus, then connect grants to investigators, institutions, publications,

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