Agent skill · mims-harvard
setup-immune-compass-remote-tool
Set up, launch, validate, and troubleshoot the immune COMPASS ToolUniverse remote tool and optionally relay it through ToolUniverse Connect. Use when deploying or auditing this implementation.
What it needs
About 5k tokens when loaded.
What this skill does
Set up immune COMPASS as a remote tool Validation status (2026-08-16): working CPU deployment. The live MCP call ran the official all-cohort COMPASS checkpoint, converted to safetensors plus data-only preprocessing, on the official GIDE sample. In the pinned torch==2.10.0 environment, the safe artifact and upstream checkpoint had zero difference in both class probabilities and all 44 concept scores. This is execution-equivalence evidence, not a clinical-accuracy benchmark. Authenticated private Platform import and owner testing passed on 2026-08-16; public publication and independent-caller authorization/isolation remain untested. Prerequisites Run from the ToolUniverse repository root on Linux with Python 3.12.3. The validated deployment uses CPU. GPU availability alone does not justify changing the device without a separate equivalence and resource test. Keep provider data, weights, caches, and credentials outside Git. Bind to loopback. A non-loopback bind requires TOOLUNIVERSEAPITOKEN; never put it in arguments or results. Run the standard-library contract check before downloading large dependencies: ~~~bash python scripts/remotevalidation/setupskillpreflight.py --implementation immune-compass ~~~ After exporting provider resources, add --check-provider-env. After the server starts, add --live to verify the exact MCP tool set without running the model. Before sharing, add --check-connect-prereqs; this reports only whether a key is set and never prints its value. Create an isolated environment ~~~bash python3 -m venv .venvs/immune-compass . .venvs/immune-compass/bin/activate python -m pip install --upgrade pip python -m pip install -e . python -m pip install -r src/tooluniverse/remote/immunecompass/requirements.txt ~~~ Package/network-dependent commands must be rerun in a clean environment before marking this skill complete. Obtain data and provision safe model weights Obtain the official COMPASS source/checkpoint and confirm model/data terms. …
How to use it
Reference it in AdaL, Claude Code, Cursor or any coding agent — nothing to install:
@skills mims-harvard/setup-immune-compass-remote-tool