Agent skill · nvidia
openfold3-nim
Use this skill for OpenFold3, NVIDIA's BioNeMo NIM microservice for biomolecular structure prediction. Invoke whenever the user mentions OpenFold3 or needs protein, protein-ligand, protein-DNA/RNA, or multi-chain complex prediction with the hosted NVIDIA API or local Docker NIM. Covers endpoint choice, auth, request payloads, output artifacts, confidence scores, and local container setup.
What it needs
About 4k tokens when loaded.
What this skill does
OpenFold3 NIM Predict biomolecular structures with OpenFold3. It supports proteins, DNA, RNA, small-molecule ligands, and multi-entity assemblies. Use this guide for basic hosted and local NIM use; load supplemental files only when the task needs deeper context: references/api.md: exact endpoints, schemas, Docker flags, response fields. references/science.md: purpose, strengths, limitations, and model handoffs. references/parameters.md: molecule fields, MSAs, templates, samples, tuning. references/validation.md: artifact checks and scientific sanity checks. references/examples.md: compact hosted and local request patterns. Choose Mode Ask only when context is unclear: Hosted NVIDIA API or local Docker NIM? Hosted URL: https://health.api.nvidia.com/v1/biology/openfold/openfold3/predict Local URL: http://localhost:8000/biology/openfold/openfold3/predict Local readiness: http://localhost:8000/v1/health/ready Mode difference: the local prediction path has no /v1/ prefix. Hosted requests use Authorization: Bearer $NGCAPIKEY. Supported local Docker startup uses NGCAPIKEY (or NVIDIAAPIKEY via the preflight) for registry login, entitlement checks, and first-run model downloads; pass it into the container with -e NGCAPIKEY. Local inference requests use no auth header after readiness, so bind the host port to loopback with -p 127.0.0.1:8000:8000. Warm-cache key-free startup varies by image version and should not be assumed. Auth And Environment Use credentials already supplied in the environment or injected by a secret manager. Do not load credential files, print keys, or enable shell tracing. Confirm keys exist with shell tests. Hosted needs NGCAPIKEY in the request header. Local startup needs NGCAPIKEY, or NVIDIAAPIKEY as a fallback, plus LOCALNIMCACHE. Local Docker Use the official OpenFold3 NIM image and mount LOCALNIMCACHE at /opt/nim/.cache. …
How to use it
Reference it in AdaL, Claude Code, Cursor or any coding agent — nothing to install:
@skills nvidia/bionemo-openfold3-nim