@skills · Owner
Agent skills by google-deepmind
40 skills indexed from github.com/google-deepmind. Reference any of them in AdaL, Claude Code, Cursor or any coding agent — nothing to install.
- alphafold-database-fetch-and-analyze · Skill · 2,648 stars
Retrieve and analyze AlphaFold predicted structures for a protein. Use when the user provides a specific UniProt Accession ID and wants structural confiden
- alphagenome-single-variant-analysis · Skill · 2,648 stars
Analyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), histone marks (ChIP), and transcription factors using the A
- chembl-database · Skill · 2,648 stars
Query the ChEMBL database for bioactive molecules, drug targets, bioactivity data, approved drugs, and chemical structures. Use when the user asks about co
- clinical-trials-database · Skill · 2,648 stars
Query ClinicalTrials.gov via APIv2. Use when you want to search for trials by condition, drug, location, status, or phase; retrieve trial details by NCT ID
- clinvar-database · Skill · 2,648 stars
Use when needing clinical significance, pathogenicity classifications (e.g., Pathogenic, Benign, VUS), clinical evidence rationales, or finding "hard posit
- credentials · Skill · 2,648 stars
Instructions for handling API keys and credentials safely, verifying their presence, and prompting the user to add them if missing using a safe protocol.
- dbsnp-database · Skill · 2,648 stars
Use when you want to look up, map, and search for short genetic variants (SNPs, indels) in NCBI's dbSNP database. Resolves between rsIDs, genomic coordinat
- embl-ebi-ols · Skill · 2,648 stars
Query and search the EMBL-EBI Ontology Lookup Service (OLS) for biomedical ontology terms, definitions, and hierarchies across 250+ ontologies (e.g., GO, D
- encode-ccres-database · Skill · 2,648 stars
Query the ENCODE Registry of cis-Regulatory Elements (cCREs) via the SCREEN GraphQL API, or make custom queries to the ENCODE Portal REST API for experimen
- ensembl-database · Skill · 2,648 stars
Query the Ensembl database to resolve gene, transcript, and protein IDs, fetch genomic or protein sequences, retrieve gene structures (exons), and get vari
- foldseek-structural-search · Skill · 2,648 stars
Performs 3D structural searches of proteins against various databases (PDB, AlphaFold, CATH, MGnify, etc.) using the Foldseek API. Use ONLY when the user p
- gnomad-database · Skill · 2,648 stars
Query the Genome Aggregation Database (gnomAD). Use when determining the rarity or allele frequency of specific genetic variants, retrieving gene constrain
- gtex-database · Skill · 2,648 stars
Use when you want to retrieve quantitative RNA expression data and variant eQTL information from the GTEx (Genotype-Tissue Expression) Project across 54 no
- human-protein-atlas-database · Skill · 2,648 stars
Use when you want to retrieve semi-quantitative protein expression and spatial localisation data from the Human Protein Atlas (HPA).
- interpro-database · Skill · 2,648 stars
Identify domains, families, and sites in proteins; find all proteins in a family or sharing a domain; explore species distribution for a domain; annotate g
- jaspar-database · Skill · 2,648 stars
Query the JASPAR database for Transcription Factor (TF) binding profiles. Use when retrieving Position Frequency Matrices (PFMs) or Position Weight Matrice
- literature-search-arxiv · Skill · 2,648 stars
Search for scientific papers, preprints, and publications on arXiv. Extract metadata, abstracts, and download full-text PDFs or HTML versions of papers. Us
- literature-search-biorxiv · Skill · 2,648 stars
Browse, filter, and download life sciences, biology, and medical preprints from bioRxiv and medRxiv. Supports fetching paper metadata by DOI, and browsing
- literature-search-europepmc · Skill · 2,648 stars
Search Europe PMC for scientific literature and download open-access full texts and PDFs. Retrieve full-text XML/plain text by PMCID, get citation lists an
- literature-search-openalex · Skill · 2,648 stars
Query the OpenAlex scholarly database for research papers, authors, institutions, topics, sources, publishers, funders, geo-locations, and keywords. Use wh
- ncbi-sequence-fetch · Skill · 2,648 stars
Retrieve protein and nucleotide sequences from NCBI databases using E-utilities. Supports direct accession lookup, CDS translation, gene+organism search, l
- openfda-database · Skill · 2,648 stars
Query, search, and download data from the openFDA API for drugs, devices, foods, tobacco, cosmetics, animal and veterinary products, substances, and transp
- opentargets-database · Skill · 2,648 stars
Query Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for the
- pdb-database · Skill · 2,648 stars
Use when you want to search for or download experimentally-determined 3D structures for biomolecules (proteins, nucleic acids, bound ligands). Supports sea
- predictingthepast · Skill · 2,648 stars
Ancient text restoration, attribution, dating, contextualization, and embedding via Aeneas (Latin) / Ithaca (Ancient Greek). Use when asked to "restore", "
- protein-sequence-msa · Skill · 2,648 stars
Performs multiple sequence alignment of proteins with EBI Clustal Omega. Use when you need to align multiple sequences to assess similarity, domain conserv
- protein-sequence-similarity-search · Skill · 2,648 stars
Searches for homologous protein sequences using MMseqs2 (fast, default) or BLAST (comprehensive, fallback). Trigger this whenever the user provides a prote
- pubchem-database · Skill · 2,648 stars
Query PubChem, search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics. Use when a user asks abo
- pubmed-database · Skill · 2,648 stars
Search PubMed for scientific literature, including published clinical trials. Fetch abstracts and full text. Link published research to biological database
- pymol · Skill · 2,648 stars
Visualize, analyze, and render protein and molecular structures using PyMOL. Use when the user wants to create images of protein structures, perform struct
- quickgo-database · Skill · 2,648 stars
Query the QuickGO and Evidence & Conclusion Ontology (ECO) REST API. Use this when you need to map genes to biological processes, molecular functions, or c
- reactome-database · Skill · 2,648 stars
Query the Reactome database (Analysis and Content Services). Use when the user asks about pathway analysis, gene list enrichment, retrieving results by tok
- science-skills · Collection · 2,648 stars
- skills · Collection · 2,648 stars
- string-database · Skill · 2,648 stars
Query the STRING database for protein-protein interactions (PPIs), functional enrichment, and homology. Use when the user asks about interactions between s
- ucsc-conservation-and-tfbs · Skill · 2,648 stars
Fetch Evolutionary Conservation scores (phyloP, phastCons) and Transcription Factor Binding Sites (TFBS) from the UCSC Genome Browser. Use when analyzing w
- unibind-database · Skill · 2,648 stars
Queries the UniBind database for experimentally validated transcription factor (TF) binding sites. Use when retrieving direct TF-DNA interaction datasets,
- uniprot-database · Skill · 2,648 stars
Access protein metadata, function, taxonomy, and sequences across UniProtKB, UniParc, and UniRef. Use when searching for proteins, mapping identifiers, or
- uv · Skill · 2,648 stars
Checks whether the uv Python package manager is installed and installs it if missing. Ensures uv is on PATH. Use when another skill requires uv as a prereq
- workflow-skill-creator · Skill · 2,648 stars
Distills a completed user workflow or interaction into a reusable agent skill. Use when the user asks to turn their workflow, interaction, or multi-step pr