@skills · Owner
Agent skills by delphine-l
43 skills indexed from github.com/delphine-l. Reference any of them in AdaL, Claude Code, Cursor or any coding agent — nothing to install.
- analysis · Collection · 17 stars
- bioinformatics · Collection · 17 stars
- bioinformatics-fundamentals · Skill · 17 stars
Core bioinformatics concepts including SAM/BAM format, AGP genome assembly format, sequencing technologies (Hi-C, HiFi, Illumina), quality metrics, and com
- bioinformatics-visualization · Skill · 17 stars
Publication-quality bioinformatics figures - phylogenetic trees, genome browsers, iTOL datasets, and data presentation
- bioservices · Skill · 17 stars
Unified Python interface to 40+ bioinformatics services (UniProt, KEGG, ChEMBL, Reactome, PSICQUIC). Best for cross-database analysis, ID mapping, and mult
- claude_global · Collection · 17 stars
- claude-collaboration · Skill · 17 stars
Best practices for using Claude Code in team environments. Covers skill management, knowledge capture, version control, and collaborative workflows.
- claude-meta · Collection · 17 stars
- claude-skill-management · Skill · 17 stars
Expert guide for managing Claude Code global skills and commands. Use when creating new skills, symlinking to projects, updating existing skills, or organi
- collaboration · Collection · 17 stars
- command-discipline · Skill · 17 stars
Run shell commands bare — no decorative echo headers ("=== X ==="), no echo-then-cmd chains, no trailing "echo done". Use the Bash tool's description field
- conda-recipe · Skill · 17 stars
Expert in building and testing conda/bioconda recipes, including recipe creation, linting, dependency management, and debugging common build errors
- data-analysis-patterns · Skill · 17 stars
Best practices for data aggregation, recalculation, and category management in scientific analyses. Covers when to recalculate vs reuse aggregated data, ha
- data-backup · Skill · 17 stars
Smart automated backup system with skill integration. Detects project type (notebooks, data files, HackMD docs) and applies appropriate cleanup before back
- data-visualization · Skill · 17 stars
Best practices for creating clear, accurate scientific visualizations with matplotlib, seaborn, and other Python plotting libraries. Covers common pitfalls
- databases · Collection · 17 stars
- documentation · Skill · 17 stars
Best practices for session documentation - incremental summaries, fix reports, and audit trails
- documentation-organization · Skill · 17 stars
Organize research project documentation - structure working files, prepare sharing packages, maintain clean project layout
- folder-organization · Skill · 17 stars
Best practices for organizing project folders, file naming conventions, and directory structure standards for research and development projects
- galaxy · Collection · 17 stars
- galaxy-automation · Skill · 17 stars
BioBlend and Planemo expertise for Galaxy workflow automation. Galaxy API usage, workflow invocation, status checking, error handling, batch processing, an
- galaxy-tool-wrapping · Skill · 17 stars
Expert in Galaxy tool wrapper development, XML schemas, Planemo testing, and best practices for creating Galaxy tools
- galaxy-training-material · Skill · 17 stars
Expert in Galaxy Training Network (GTN) tutorial development. GTN markdown syntax, special boxes, tool references, snippets, YAML front matter, and best pr
- galaxy-workflow-development · Skill · 17 stars
Expert in Galaxy workflow development, testing, and IWC best practices. Create, validate, and optimize .ga workflows following Intergalactic Workflow Commi
- genomeark-aws · Skill · 17 stars
Access and navigate GenomeArk AWS S3 bucket - VGP assemblies, QC data, and species directory structure
- gget · Skill · 17 stars
Fast CLI/Python queries to 20+ bioinformatics databases. Gene info, BLAST, AlphaFold structures, enrichment analysis, single-cell data, disease association
- gnomad-database · Skill · 17 stars
Query gnomAD (Genome Aggregation Database) for population allele frequencies, variant constraint scores (pLI, LOEUF), and loss-of-function intolerance via
- hackmd · Skill · 17 stars
HackMD collaborative markdown - slide presentations, embedded SVG diagrams, and real-time editing best practices
- jupyter-notebook-analysis · Skill · 17 stars
Best practices for creating comprehensive Jupyter notebook data analyses with statistical rigor, outlier handling, and publication-quality visualizations.
- managing-environments · Skill · 17 stars
Best practices for managing development environments including Python venv and conda. Always check environment status before installations and confirm with
- obsidian · Skill · 17 stars
Integration with Obsidian vault for managing notes, tasks, and knowledge when working with Claude. Supports adding notes, creating tasks, and organizing pr
- packaging · Collection · 17 stars
- phylogenetics · Skill · 17 stars
Phylogenetic tree analysis, visualization, annotation management, and iTOL troubleshooting
- project-management · Collection · 17 stars
- project-sharing · Skill · 17 stars
Prepare organized packages of project files for sharing at different levels - from summary PDFs to fully reproducible archives. Creates copies with cleaned
- scientific-publication · Skill · 17 stars
Best practices for iterative refinement of publication-quality scientific figures. Covers systematic improvement workflows, layout optimization, and ensuri
- skills · Collection · 17 stars
- systematic-debugging · Skill · 17 stars
Structured 4-phase debugging methodology. Use when encountering any bug, test failure, unexpected behavior, or pipeline error — before proposing fixes. Enf
- token-efficiency · Skill · 17 stars
Token optimization best practices for cost-effective Claude Code usage. Automatically applies efficient file reading, command execution, and output handlin
- verification-before-completion · Skill · 17 stars
Enforces evidence-based completion claims. Use before claiming work is done, tests pass, or bugs are fixed. Requires running verification commands and conf
- vgp · Collection · 17 stars
- vgp-pipeline · Skill · 17 stars
VGP assembly pipeline - Galaxy workflow selection, execution patterns, QC checkpoints, and batch orchestration
- workflow-maintenance-log · Skill · 17 stars
Maintain per-workflow developer logs in Obsidian when working on Galaxy workflows. Use whenever creating, version-bumping, fixing, or updating an IWC/Galax